Variant report

Variant	rs540041130
Chromosome Location	chr14:36973542-36973543
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040256	chr14:36501452-37172046	Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
2	nsv542040	chr14:36501452-37172046	Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
3	nsv1047290	chr14:36564568-37445157	Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	43 gene(s)	inside rSNPs	diseases
4	nsv1037952	chr14:36670484-37294692	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
5	nsv542042	chr14:36670484-37294692	Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
6	nsv1053685	chr14:36915643-37245920	Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
7	nsv917279	chr14:36953511-37146655	Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
8	nsv977584	chr14:36972742-36978499	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:36972400-36975000	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
2	chr14:36972600-36974200	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
3	chr14:36972600-36974200	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
4	chr14:36972800-36973600	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
5	chr14:36972800-36974800	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
6	chr14:36973000-36973800	Bivalent Enhancer	Placenta Amnion	Placenta Amnion
7	chr14:36973000-36974000	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr14:36973000-36974400	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
9	chr14:36973200-36973600	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr14:36973200-36973600	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
11	chr14:36973200-36973800	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr14:36973200-36973800	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
13	chr14:36973200-36973800	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
14	chr14:36973200-36973800	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr14:36973200-36973800	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr14:36973200-36973800	ZNF genes & repeats	Lung	lung
17	chr14:36973200-36973800	Enhancers	Pancreas	Pancrea
18	chr14:36973200-36973800	Flanking Bivalent TSS/Enh	Psoas Muscle	Psoas
19	chr14:36973200-36973800	Flanking Active TSS	Right Atrium	heart
20	chr14:36973200-36973800	Flanking Bivalent TSS/Enh	Right Ventricle	heart
21	chr14:36973200-36974000	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
22	chr14:36973200-36974000	Enhancers	Spleen	Spleen
23	chr14:36973200-36974200	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
24	chr14:36973200-36974800	Bivalent Enhancer	Liver	Liver
25	chr14:36973200-36975000	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr14:36973200-36975000	Bivalent Enhancer	Adipose Nuclei	Adipose
27	chr14:36973400-36973600	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr14:36973400-36973600	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr14:36973400-36973600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr14:36973400-36973600	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr14:36973400-36973600	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr14:36973400-36973600	Bivalent Enhancer	Ovary	ovary
33	chr14:36973400-36973800	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr14:36973400-36973800	Bivalent/Poised TSS	Aorta	Aorta
35	chr14:36973400-36973800	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
36	chr14:36973400-36973800	Bivalent Enhancer	Esophagus	oesophagus
37	chr14:36973400-36973800	Bivalent Enhancer	Left Ventricle	heart

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