Variant report

Variant	rs540058728
Chromosome Location	chr8:57905430-57905431
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:57891643..57894816-chr8:57903794..57907010,5	K562	blood:
2	chr8:57892210..57896083-chr8:57903794..57907547,6	K562	blood:

Variant related genes	Relation type
ENSG00000104331	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029443	chr8:57748114-58057656	Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	esv3430321	chr8:57858417-58055129	Strong transcription Genic enhancers Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv1027125	chr8:57891279-58095884	Weak transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv3436028	chr8:57905223-57907771	Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:57901800-57907200	Active TSS	GM12878-XiMat	blood
2	chr8:57903200-57907000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr8:57903400-57907200	Active TSS	Psoas Muscle	Psoas
4	chr8:57903600-57905600	Active TSS	ES-I3 Cell Line	embryonic stem cell
5	chr8:57903600-57905800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr8:57903600-57906800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr8:57903600-57907200	Active TSS	HUES6 Cell Line	embryonic stem cell
8	chr8:57903600-57907200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr8:57903800-57906000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr8:57903800-57907200	Active TSS	NHDF-Ad	bronchial
11	chr8:57904000-57906600	Active TSS	K562	blood
12	chr8:57904000-57907000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr8:57904000-57907000	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr8:57904000-57907200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr8:57904000-57907400	Active TSS	HMEC	breast
16	chr8:57904200-57907200	Active TSS	Right Atrium	heart
17	chr8:57904200-57907400	Active TSS	Breast Myoepithelial Primary Cells	Breast
18	chr8:57904400-57905800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr8:57904400-57906800	Active TSS	Brain Angular Gyrus	brain
20	chr8:57904400-57907200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
21	chr8:57904400-57907200	Active TSS	iPS-20b Cell Line	embryonic stem cell
22	chr8:57904400-57907200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr8:57904400-57907200	Active TSS	HSMMtube	muscle
24	chr8:57904400-57907400	Active TSS	NHLF	lung
25	chr8:57904600-57905800	Flanking Active TSS	Primary hematopoietic stem cells	blood
26	chr8:57904600-57906000	Flanking Active TSS	Primary B cells from cord blood	blood
27	chr8:57904600-57906800	Active TSS	Fetal Muscle Leg	muscle
28	chr8:57904600-57907000	Active TSS	Placenta	Placenta
29	chr8:57904600-57907000	Active TSS	Fetal Stomach	stomach
30	chr8:57904600-57907200	Active TSS	Ovary	ovary
31	chr8:57904600-57907200	Active TSS	Right Ventricle	heart
32	chr8:57904600-57907200	Active TSS	Thymus	Thymus
33	chr8:57904600-57907200	Active TSS	HSMM	muscle
34	chr8:57904800-57905800	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
35	chr8:57904800-57906000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
36	chr8:57904800-57906600	Active TSS	Fetal Thymus	thymus
37	chr8:57904800-57907000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
38	chr8:57904800-57907000	Active TSS	Brain Germinal Matrix	brain
39	chr8:57904800-57907000	Active TSS	A549	lung
40	chr8:57904800-57907000	Active TSS	Hela-S3	cervix
41	chr8:57904800-57907200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
42	chr8:57904800-57907200	Active TSS	Colonic Mucosa	Colon
43	chr8:57904800-57907200	Active TSS	NHEK	skin
44	chr8:57904800-57907400	Active TSS	Rectal Mucosa Donor 29	rectum
45	chr8:57905000-57905600	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
46	chr8:57905000-57905600	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr8:57905000-57905600	Active TSS	Skeletal Muscle Male	skeletal muscle
48	chr8:57905000-57905600	Active TSS	Dnd41	blood
49	chr8:57905000-57905800	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
50	chr8:57905000-57906400	Active TSS	Small Intestine	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links