Variant report

Variant	rs540069666
Chromosome Location	chr3:111288891-111288892
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460821	chr3:110637471-111501097	Enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv591275	chr3:110637471-111501097	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv997756	chr3:111226058-111376585	Active TSS Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv965196	chr3:111288442-111289914	Genic enhancers Strong transcription Weak transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111269800-111289200	Weak transcription	Thymus	Thymus
2	chr3:111285000-111289600	Strong transcription	Dnd41	blood
3	chr3:111286200-111289400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr3:111286400-111293200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr3:111287000-111289600	Strong transcription	Primary T helper cells fromperipheralblood	blood
6	chr3:111287200-111289200	Weak transcription	Primary T cells from cord blood	blood
7	chr3:111287200-111290600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr3:111287600-111290200	Weak transcription	Fetal Thymus	thymus
9	chr3:111287800-111290400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr3:111287800-111293000	Genic enhancers	Primary T helper cells PMA-I stimulated	--
11	chr3:111288200-111290000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr3:111288400-111289400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr3:111288400-111289600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr3:111288400-111290200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr3:111288400-111296000	Weak transcription	Primary B cells from peripheral blood	blood
16	chr3:111288600-111289800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr3:111288600-111296600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr3:111288800-111289400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr3:111288800-111291200	Genic enhancers	Primary T cells fromperipheralblood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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