Variant report

Variant	rs540087596
Chromosome Location	chr10:23480137-23480138
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTBP2	chr10:23479936-23482481	H1-hESC	embryonic stem cell:	n/a	n/a
2	GTF2F1	chr10:23480130-23480222	H1-hESC	embryonic stem cell:	n/a	n/a
3	SUZ12	chr10:23479864-23482543	NT2-D1	testis:	n/a	n/a
4	SUZ12	chr10:23479777-23482696	H1-hESC	embryonic stem cell:	n/a	n/a

Variant related genes	Relation type
PTF1A	TF binding region

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv825301	chr10:23440604-23505846	Flanking Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv831810	chr10:23445647-23605270	Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv825302	chr10:23457022-23497329	Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv2754706	chr10:23477062-23509344	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv2756096	chr10:23477062-23509344	Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv430137	chr10:23477062-23509344	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	esv3408507	chr10:23479971-23482819	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23479200-23480400	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
2	chr10:23479200-23481600	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr10:23479200-23483400	Active TSS	Pancreas	Pancrea
4	chr10:23479400-23480600	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
5	chr10:23479600-23480800	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
6	chr10:23479600-23481400	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr10:23479800-23480200	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr10:23479800-23480200	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
9	chr10:23479800-23480400	Active TSS	Pancreatic Islets	Pancreatic Islet
10	chr10:23479800-23480800	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr10:23479800-23482600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
12	chr10:23480000-23480200	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
13	chr10:23480000-23480200	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
14	chr10:23480000-23480200	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
15	chr10:23480000-23480200	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
16	chr10:23480000-23480400	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
17	chr10:23480000-23480400	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr10:23480000-23480600	Bivalent Enhancer	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr10:23480000-23481000	Bivalent Enhancer	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr10:23480000-23481600	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
21	chr10:23480000-23481800	Bivalent Enhancer	Fetal Brain Male	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links