Variant report

Variant	rs540088874
Chromosome Location	chr3:133178919-133178920
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:133169398..133190840-chr3:133288286..133298861,41	MCF-7	breast:
2	chr3:133167608..133169678-chr3:133177159..133179764,2	MCF-7	breast:
3	chr3:133161498..133163430-chr3:133177580..133180492,2	MCF-7	breast:
4	chr3:133178497..133180168-chr3:133538134..133540708,2	MCF-7	breast:
5	chr3:133153374..133155623-chr3:133178756..133181568,2	MCF-7	breast:
6	chr3:133173610..133177245-chr3:133178784..133182075,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000170819	Chromatin interaction
ENSG00000249993	Chromatin interaction
ENSG00000091527	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007047	chr3:133137664-133181388	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1006289	chr3:133137664-133186808	Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv1829199	chr3:133158065-133213047	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv877505	chr3:133167363-133235272	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv237800	chr3:133178030-133185521	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133161000-133191000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:133169800-133179400	Weak transcription	GM12878-XiMat	blood
3	chr3:133175000-133179600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr3:133177200-133185800	Enhancers	Fetal Thymus	thymus
5	chr3:133177400-133180600	Enhancers	Thymus	Thymus
6	chr3:133177600-133181600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr3:133177800-133179000	Enhancers	Liver	Liver
8	chr3:133177800-133179200	Enhancers	Colon Smooth Muscle	Colon
9	chr3:133177800-133179600	Enhancers	Esophagus	oesophagus
10	chr3:133177800-133180000	Enhancers	Fetal Stomach	stomach
11	chr3:133178000-133179000	Enhancers	Stomach Smooth Muscle	stomach
12	chr3:133178000-133180800	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr3:133178200-133179000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr3:133178200-133179000	Enhancers	Fetal Lung	lung
15	chr3:133178200-133179600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr3:133178200-133180000	Enhancers	Adipose Nuclei	Adipose
17	chr3:133178200-133180000	Enhancers	Psoas Muscle	Psoas
18	chr3:133178200-133180000	Enhancers	Right Atrium	heart
19	chr3:133178200-133180400	Enhancers	Fetal Muscle Leg	muscle
20	chr3:133178200-133180600	Enhancers	Rectal Mucosa Donor 31	rectum
21	chr3:133178200-133181000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr3:133178200-133181400	Enhancers	Breast Myoepithelial Primary Cells	Breast
23	chr3:133178400-133179400	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr3:133178400-133180000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr3:133178400-133180000	Enhancers	Colonic Mucosa	Colon
26	chr3:133178400-133180000	Enhancers	Placenta	Placenta
27	chr3:133178400-133180000	Enhancers	Stomach Mucosa	stomach
28	chr3:133178400-133180600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr3:133178600-133179000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr3:133178600-133179000	Enhancers	Aorta	Aorta
31	chr3:133178600-133179000	Enhancers	Fetal Heart	heart
32	chr3:133178600-133179600	Weak transcription	A549	lung
33	chr3:133178600-133180000	Enhancers	Rectal Mucosa Donor 29	rectum
34	chr3:133178600-133181200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr3:133178600-133185600	Weak transcription	Left Ventricle	heart
36	chr3:133178800-133179000	Enhancers	Fetal Kidney	kidney
37	chr3:133178800-133179000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
38	chr3:133178800-133179200	Bivalent Enhancer	HepG2	liver
39	chr3:133178800-133179400	Weak transcription	HSMMtube	muscle
40	chr3:133178800-133181000	Enhancers	Placenta Amnion	Placenta Amnion
41	chr3:133178800-133186800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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