Variant report

Variant	rs540089340
Chromosome Location	chr6:34482955-34482956
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:34482918..34485421-chr6:35035460..35037570,2	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022844	chr6:34317219-35060519	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv538195	chr6:34317219-35060519	Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
3	esv2758046	chr6:34382492-34714677	Genic enhancers Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
4	esv2759418	chr6:34382492-34714677	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
5	nsv885785	chr6:34404636-34874002	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
6	nsv462904	chr6:34416388-34493012	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
7	nsv602903	chr6:34416388-34493012	Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
8	nsv885786	chr6:34426884-34542662	Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	16 gene(s)	inside rSNPs	diseases
9	esv1813536	chr6:34455242-34545123	Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
10	nsv885787	chr6:34458533-34546560	Active TSS Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
11	nsv885788	chr6:34464010-34551912	Weak transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
12	nsv1033583	chr6:34471572-34828372	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
13	nsv885789	chr6:34474939-34546560	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
14	nsv1033325	chr6:34482287-34517857	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:34441400-34494000	Weak transcription	Right Atrium	heart
2	chr6:34479000-34485200	Enhancers	Fetal Brain Male	brain
3	chr6:34482000-34483000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
4	chr6:34482000-34483000	Active TSS	Brain Inferior Temporal Lobe	brain
5	chr6:34482200-34483000	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
6	chr6:34482200-34483000	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr6:34482200-34483000	Active TSS	HUES48 Cell Line	embryonic stem cell
8	chr6:34482200-34483000	Active TSS	iPS-18 Cell Line	embryonic stem cell
9	chr6:34482200-34483000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr6:34482200-34483200	Flanking Bivalent TSS/Enh	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr6:34482200-34483200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
12	chr6:34482200-34483200	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
13	chr6:34482200-34483200	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr6:34482200-34483400	Active TSS	H9 Cell Line	embryonic stem cell
15	chr6:34482200-34484400	Active TSS	Brain Cingulate Gyrus	brain
16	chr6:34482200-34484400	Flanking Active TSS	Brain Germinal Matrix	brain
17	chr6:34482400-34483000	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
18	chr6:34482400-34483000	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr6:34482400-34483000	Active TSS	iPS-15b Cell Line	embryonic stem cell
20	chr6:34482400-34483000	Bivalent Enhancer	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr6:34482400-34483000	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
22	chr6:34482400-34483000	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr6:34482400-34483000	Enhancers	Placenta	Placenta
24	chr6:34482400-34483200	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr6:34482400-34483200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr6:34482400-34483200	Enhancers	Gastric	stomach
27	chr6:34482400-34483200	Enhancers	Ovary	ovary
28	chr6:34482400-34483400	Enhancers	Brain Substantia Nigra	brain
29	chr6:34482400-34484000	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr6:34482400-34485000	Active TSS	Brain Anterior Caudate	brain
31	chr6:34482600-34483000	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr6:34482600-34483000	Bivalent Enhancer	Muscle Satellite Cultured Cells	--
33	chr6:34482600-34483000	Flanking Active TSS	Brain Angular Gyrus	brain
34	chr6:34482600-34483000	Active TSS	Pancreatic Islets	Pancreatic Islet
35	chr6:34482600-34483000	Weak transcription	K562	blood
36	chr6:34482600-34483000	Bivalent Enhancer	NH-A	brain
37	chr6:34482600-34483200	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
38	chr6:34482600-34483200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
39	chr6:34482600-34483200	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr6:34482600-34483200	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr6:34482600-34483200	Enhancers	Fetal Lung	lung
42	chr6:34482600-34483400	Bivalent Enhancer	Fetal Muscle Leg	muscle
43	chr6:34482800-34483000	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
44	chr6:34482800-34483000	Flanking Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr6:34482800-34483000	Flanking Bivalent TSS/Enh	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr6:34482800-34483000	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr6:34482800-34483000	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr6:34482800-34483000	Flanking Bivalent TSS/Enh	Brain Hippocampus Middle	brain
49	chr6:34482800-34483000	Enhancers	Duodenum Smooth Muscle	Duodenum
50	chr6:34482800-34483000	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland

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