Variant report

Variant	rs540091171
Chromosome Location	chr11:9078147-9078148
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:9070098..9074605-chr11:9077166..9080417,4	K562	blood:
2	chr11:9078071..9079689-chr9:92219545..92221105,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AKIP1-7	chr11:9078045-9078561	NONHSAT017903

Variant related genes	Relation type
ENSG00000130222	Chromatin interaction
ENSG00000175356	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413845	chr11:8887279-9285127	Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv896984	chr11:8988550-9090408	Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	esv33264	chr11:9007612-9311131	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv896985	chr11:9013002-9152463	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
5	nsv467704	chr11:9059192-9125301	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
6	nsv553454	chr11:9059192-9125301	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
7	nsv467706	chr11:9077652-9114999	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
8	nsv553455	chr11:9077652-9114999	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9058400-9099800	Weak transcription	Aorta	Aorta
2	chr11:9066000-9081800	Weak transcription	Small Intestine	intestine
3	chr11:9069000-9080400	Weak transcription	Fetal Intestine Large	intestine
4	chr11:9069000-9092400	Weak transcription	Fetal Intestine Small	intestine
5	chr11:9069200-9083800	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr11:9070200-9078600	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr11:9070200-9087400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr11:9070200-9097200	Weak transcription	Brain Cingulate Gyrus	brain
9	chr11:9070400-9098400	Weak transcription	Colonic Mucosa	Colon
10	chr11:9070600-9087800	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr11:9070600-9091600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr11:9071200-9087200	Weak transcription	Fetal Brain Male	brain
13	chr11:9074800-9080600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr11:9075000-9081200	Weak transcription	Duodenum Mucosa	Duodenum
15	chr11:9075000-9088000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr11:9075000-9092600	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr11:9075200-9087200	Weak transcription	Pancreas	Pancrea
18	chr11:9075600-9078200	Weak transcription	NHDF-Ad	bronchial
19	chr11:9075800-9078200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr11:9076000-9085800	Weak transcription	Placenta	Placenta
21	chr11:9076200-9078400	Weak transcription	HSMMtube	muscle
22	chr11:9076200-9085800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr11:9076200-9087000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr11:9076200-9087200	Weak transcription	HSMM	muscle
25	chr11:9077000-9079800	Enhancers	Fetal Muscle Leg	muscle
26	chr11:9077400-9078600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr11:9077400-9079000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr11:9077400-9079000	Weak transcription	Fetal Stomach	stomach
29	chr11:9077400-9080600	Weak transcription	Stomach Smooth Muscle	stomach
30	chr11:9077600-9078800	Enhancers	Adipose Nuclei	Adipose
31	chr11:9077800-9078200	Enhancers	Colon Smooth Muscle	Colon
32	chr11:9077800-9078400	Enhancers	Fetal Muscle Trunk	muscle
33	chr11:9078000-9078400	Enhancers	Gastric	stomach
34	chr11:9078000-9078600	Enhancers	iPS-15b Cell Line	embryonic stem cell
35	chr11:9078000-9079000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr11:9078000-9079000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr11:9078000-9079000	Enhancers	Duodenum Smooth Muscle	Duodenum
38	chr11:9078000-9079000	Enhancers	Fetal Lung	lung

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