Variant report

Variant	rs540106466
Chromosome Location	chr6:144011354-144011355
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:143996710..144001910-chr6:144005817..144014875,10	MCF-7	breast:
2	chr6:144011351..144015622-chr6:144016784..144019989,3	K562	blood:
3	chr6:143997575..144000803-chr6:144010017..144014247,5	MCF-7	breast:
4	chr6:144009959..144011502-chr6:144013449..144016270,2	K562	blood:

Variant related genes	Relation type
ENSG00000112419	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758084	chr6:143916621-144079976	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv2759476	chr6:143916621-144079976	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv886737	chr6:144010570-144033992	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144001800-144012200	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr6:144002000-144013000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr6:144003600-144015000	Weak transcription	Esophagus	oesophagus
4	chr6:144003600-144015000	Weak transcription	Gastric	stomach
5	chr6:144004400-144013000	Weak transcription	Fetal Kidney	kidney
6	chr6:144005000-144020400	Weak transcription	Fetal Muscle Trunk	muscle
7	chr6:144005600-144016000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr6:144005800-144015200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr6:144006000-144013200	Weak transcription	Small Intestine	intestine
10	chr6:144006000-144017800	Weak transcription	Fetal Heart	heart
11	chr6:144007800-144011800	Enhancers	Left Ventricle	heart
12	chr6:144007800-144013200	Enhancers	HepG2	liver
13	chr6:144007800-144013600	Enhancers	H1 Cell Line	embryonic stem cell
14	chr6:144008000-144014000	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr6:144008200-144012000	Weak transcription	Liver	Liver
16	chr6:144008400-144012800	Weak transcription	Fetal Intestine Large	intestine
17	chr6:144008600-144011600	Enhancers	Psoas Muscle	Psoas
18	chr6:144008600-144015000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr6:144008800-144011400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr6:144008800-144011600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
21	chr6:144008800-144015000	Weak transcription	NHEK	skin
22	chr6:144009000-144011400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr6:144009000-144011600	Enhancers	Right Ventricle	heart
24	chr6:144009000-144013400	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr6:144009000-144015200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr6:144009200-144011600	Enhancers	Aorta	Aorta
27	chr6:144009200-144015000	Weak transcription	HMEC	breast
28	chr6:144009200-144016200	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr6:144009400-144011600	Enhancers	Lung	lung
30	chr6:144009400-144011600	Enhancers	Stomach Smooth Muscle	stomach
31	chr6:144009400-144011600	Weak transcription	HUVEC	blood vessel
32	chr6:144009400-144012800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr6:144009400-144015600	Weak transcription	Primary monocytes fromperipheralblood	blood
34	chr6:144009400-144016600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr6:144009600-144011400	Weak transcription	Skeletal Muscle Male	skeletal muscle
36	chr6:144009600-144013000	Weak transcription	Rectal Smooth Muscle	rectum
37	chr6:144009600-144015000	Weak transcription	Colon Smooth Muscle	Colon
38	chr6:144010000-144011600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
39	chr6:144010000-144011800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr6:144010000-144014000	Enhancers	HUES64 Cell Line	embryonic stem cell
41	chr6:144010200-144012800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr6:144010200-144012800	Weak transcription	Right Atrium	heart
43	chr6:144010200-144013600	Enhancers	HUES6 Cell Line	embryonic stem cell
44	chr6:144010200-144015200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr6:144010200-144019600	Weak transcription	Spleen	Spleen
46	chr6:144010400-144011400	Weak transcription	H9 Cell Line	embryonic stem cell
47	chr6:144010400-144011400	Enhancers	iPS-20b Cell Line	embryonic stem cell
48	chr6:144010400-144011400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr6:144010400-144011400	Weak transcription	Fetal Muscle Leg	muscle
50	chr6:144010400-144011800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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