Variant report

Variant	rs540109137
Chromosome Location	chr2:149286906-149286907
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:149281538..149284330-chr2:149286609..149289120,3	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012275	chr2:149031668-149316793	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv2751831	chr2:149151358-150105603	Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
3	nsv1000101	chr2:149165813-149361220	Enhancers Strong transcription Genic enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv868861	chr2:149198443-149434604	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv917109	chr2:149198443-149948302	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
6	nsv1004663	chr2:149214090-149373061	Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	esv2762913	chr2:149249683-149345487	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv527539	chr2:149283070-149330251	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	esv3426219	chr2:149286782-149290980	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:149247600-149291000	Weak transcription	Spleen	Spleen
2	chr2:149267400-149288400	Weak transcription	Fetal Brain Female	brain
3	chr2:149267400-149288800	Weak transcription	Right Ventricle	heart
4	chr2:149270600-149288400	Weak transcription	Fetal Heart	heart
5	chr2:149272400-149288800	Weak transcription	Left Ventricle	heart
6	chr2:149272600-149287600	Weak transcription	Pancreas	Pancrea
7	chr2:149277200-149287000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr2:149280200-149287200	Enhancers	Thymus	Thymus
9	chr2:149281000-149288000	Enhancers	Fetal Thymus	thymus
10	chr2:149281400-149292200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr2:149281400-149296400	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr2:149283000-149288800	Weak transcription	Right Atrium	heart
13	chr2:149283800-149287200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
14	chr2:149284400-149290600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr2:149286000-149289000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
16	chr2:149286200-149287400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
17	chr2:149286200-149289800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
18	chr2:149286200-149295800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
19	chr2:149286400-149287800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr2:149286400-149288600	Enhancers	Primary T cells fromperipheralblood	blood
21	chr2:149286400-149288800	Enhancers	Primary T helper cells fromperipheralblood	blood
22	chr2:149286400-149289000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr2:149286400-149289000	Enhancers	Primary T helper naive cells from peripheral blood	blood
24	chr2:149286400-149289600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
25	chr2:149286400-149290800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
26	chr2:149286600-149287800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr2:149286600-149289200	Enhancers	Primary T cells from cord blood	blood
28	chr2:149286800-149288800	Enhancers	Primary T helper cells PMA-I stimulated	--
29	chr2:149286800-149288800	Enhancers	Primary T killer memory cells from peripheral blood	blood
30	chr2:149286800-149289400	Enhancers	Primary T helper naive cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links