Variant report

Variant	rs540122950
Chromosome Location	chr15:73422186-73422187
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:73421059..73423677-chr15:73433807..73436410,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000259691	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3352103	chr15:73191535-73454001	Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv482421	chr15:73279141-73426897	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
3	nsv904338	chr15:73313691-73483718	Enhancers Active TSS Strong transcription ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv517966	chr15:73349633-73488753	Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv525462	chr15:73349633-73563495	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv904339	chr15:73375847-73483718	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv904340	chr15:73375847-73524629	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv904341	chr15:73390790-73483718	ZNF genes & repeats Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv904342	chr15:73390790-73524629	Enhancers ZNF genes & repeats Strong transcription Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv904343	chr15:73396760-73775043	Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
11	nsv527236	chr15:73421239-73469535	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73388800-73431200	Weak transcription	Rectal Smooth Muscle	rectum
2	chr15:73393200-73422400	Weak transcription	Aorta	Aorta
3	chr15:73396400-73444600	Weak transcription	Psoas Muscle	Psoas
4	chr15:73400400-73434200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr15:73401200-73423000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr15:73401200-73428200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr15:73401400-73422400	Weak transcription	Pancreas	Pancrea
8	chr15:73401400-73422800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr15:73401400-73480200	Weak transcription	Right Ventricle	heart
10	chr15:73403000-73443400	Weak transcription	Fetal Kidney	kidney
11	chr15:73404200-73425800	Weak transcription	Small Intestine	intestine
12	chr15:73404200-73442600	Weak transcription	Left Ventricle	heart
13	chr15:73406600-73422400	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr15:73406600-73423200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr15:73406600-73425200	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr15:73406600-73432600	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr15:73407400-73431600	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr15:73408000-73443400	Weak transcription	Adipose Nuclei	Adipose
19	chr15:73408800-73424600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr15:73409200-73422800	Weak transcription	Fetal Muscle Trunk	muscle
21	chr15:73409200-73429200	Weak transcription	Esophagus	oesophagus
22	chr15:73410600-73434600	Weak transcription	Liver	Liver
23	chr15:73410800-73431400	Weak transcription	Colon Smooth Muscle	Colon
24	chr15:73413200-73437200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr15:73413400-73434200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr15:73413600-73446400	Weak transcription	Stomach Smooth Muscle	stomach
27	chr15:73414000-73428200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr15:73414000-73437000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr15:73414000-73440000	Weak transcription	Fetal Brain Female	brain
30	chr15:73414200-73428600	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr15:73414200-73445600	Weak transcription	Brain Substantia Nigra	brain
32	chr15:73414400-73458200	Weak transcription	Colonic Mucosa	Colon
33	chr15:73414600-73436600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr15:73415000-73425400	Strong transcription	Rectal Mucosa Donor 31	rectum
35	chr15:73415200-73422800	Weak transcription	Skeletal Muscle Female	skeletal muscle
36	chr15:73415400-73423800	Weak transcription	Fetal Heart	heart
37	chr15:73415400-73446600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr15:73415600-73428400	Weak transcription	HUES64 Cell Line	embryonic stem cell
39	chr15:73416000-73453200	Weak transcription	Brain Cingulate Gyrus	brain
40	chr15:73416600-73422200	Weak transcription	Duodenum Mucosa	Duodenum
41	chr15:73416600-73428400	Weak transcription	Fetal Lung	lung
42	chr15:73416600-73444600	Weak transcription	Fetal Muscle Leg	muscle
43	chr15:73416600-73444600	Weak transcription	Lung	lung
44	chr15:73416800-73422600	Weak transcription	Fetal Stomach	stomach
45	chr15:73416800-73448800	Weak transcription	Ovary	ovary
46	chr15:73417000-73443000	Weak transcription	Skeletal Muscle Male	skeletal muscle
47	chr15:73417400-73423200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr15:73418200-73433200	Weak transcription	Pancreatic Islets	Pancreatic Islet
49	chr15:73418600-73430600	Weak transcription	Fetal Brain Male	brain
50	chr15:73419400-73428800	Weak transcription	Sigmoid Colon	Sigmoid Colon

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