Variant report

Variant	rs540130534
Chromosome Location	chr7:150748470-150748471
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:150064606..150067565-chr7:150746513..150748694,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000214022	Chromatin interaction
ENSG00000196456	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1821419	chr7:150593315-150974269	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	128 gene(s)	inside rSNPs	diseases
2	nsv1022246	chr7:150619660-150779924	Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Enhancers Weak transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
3	nsv889465	chr7:150640285-150800823	Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
4	nsv1017863	chr7:150643928-150779924	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
5	nsv539197	chr7:150643928-150779924	Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
6	nsv1028645	chr7:150643928-150806534	Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	59 gene(s)	inside rSNPs	diseases
7	nsv539198	chr7:150643928-150879259	Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
8	nsv889471	chr7:150700946-150751590	Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
9	nsv526410	chr7:150714812-150775306	Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
10	nsv889476	chr7:150729212-150951819	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	120 gene(s)	inside rSNPs	diseases
11	nsv1031733	chr7:150730999-150790517	Transcr. at gene 5' and 3' Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
12	nsv524928	chr7:150731698-150766799	Genic enhancers Bivalent Enhancer Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
13	nsv889477	chr7:150731698-150837529	Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	57 gene(s)	inside rSNPs	diseases
14	nsv889478	chr7:150732812-150889527	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	61 gene(s)	inside rSNPs	diseases
15	nsv831188	chr7:150735204-150912875	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
16	nsv889479	chr7:150736382-150785321	Flanking Active TSS Active TSS Enhancers Genic enhancers Bivalent Enhancer Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
17	nsv889480	chr7:150736382-150797581	Active TSS Bivalent Enhancer Genic enhancers Flanking Active TSS Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
18	nsv1028023	chr7:150738624-150790517	Strong transcription Genic enhancers Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
19	esv3361397	chr7:150747444-150749992	Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
20	esv3389454	chr7:150748469-150750967	Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:150736800-150753800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr7:150738600-150749600	Weak transcription	K562	blood
3	chr7:150739600-150750000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr7:150740200-150753800	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr7:150741400-150749400	Weak transcription	Brain Substantia Nigra	brain
6	chr7:150741600-150751200	Weak transcription	Primary B cells from cord blood	blood
7	chr7:150742600-150754400	Weak transcription	Aorta	Aorta
8	chr7:150742800-150750200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr7:150743200-150748800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr7:150743800-150749200	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr7:150743800-150753800	Weak transcription	Liver	Liver
12	chr7:150744000-150748800	Weak transcription	Primary T cells from cord blood	blood
13	chr7:150744200-150748800	Weak transcription	Brain Angular Gyrus	brain
14	chr7:150744400-150751200	Weak transcription	Brain Cingulate Gyrus	brain
15	chr7:150744400-150754000	Weak transcription	A549	lung
16	chr7:150744800-150754200	Weak transcription	Right Atrium	heart
17	chr7:150745200-150754000	Weak transcription	HSMMtube	muscle
18	chr7:150745200-150754200	Weak transcription	NHDF-Ad	bronchial
19	chr7:150746000-150754000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr7:150746600-150749200	Enhancers	Primary hematopoietic stem cells short term culture	blood
21	chr7:150747200-150749600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
22	chr7:150747800-150748600	Enhancers	Breast Myoepithelial Primary Cells	Breast
23	chr7:150747800-150748600	Enhancers	Primary T helper naive cells from peripheral blood	blood
24	chr7:150747800-150748600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
25	chr7:150747800-150748600	Bivalent/Poised TSS	Fetal Brain Female	brain
26	chr7:150747800-150748600	Enhancers	Lung	lung
27	chr7:150747800-150749000	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr7:150747800-150749000	Bivalent Enhancer	Fetal Muscle Leg	muscle
29	chr7:150747800-150749200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
30	chr7:150747800-150749200	Bivalent Enhancer	Fetal Thymus	thymus
31	chr7:150747800-150749400	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
32	chr7:150748000-150748600	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
33	chr7:150748000-150748600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr7:150748000-150748600	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
35	chr7:150748000-150748600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr7:150748000-150748600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
37	chr7:150748000-150748600	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
38	chr7:150748000-150748600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
39	chr7:150748000-150748600	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr7:150748000-150748600	Enhancers	Primary T helper cells fromperipheralblood	blood
41	chr7:150748000-150748600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr7:150748000-150748600	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr7:150748000-150748600	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr7:150748000-150748600	Bivalent Enhancer	Fetal Stomach	stomach
45	chr7:150748000-150748600	Enhancers	Sigmoid Colon	Sigmoid Colon
46	chr7:150748000-150748600	Enhancers	Skeletal Muscle Female	skeletal muscle
47	chr7:150748000-150748600	Flanking Active TSS	Dnd41	blood
48	chr7:150748000-150748600	Active TSS	NHEK	skin
49	chr7:150748000-150748800	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
50	chr7:150748000-150749000	Enhancers	Cortex derived primary cultured neurospheres	brain

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