The 2.0 version of rSNPBase

Variant report

Variant rs540132341
Chromosome Location chr1:93966787-93966788
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:57 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:93943200-93974400 Weak transcription Fetal Lung lung
2 chr1:93944000-93974600 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
3 chr1:93944200-93971800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
4 chr1:93944200-93974800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
5 chr1:93946800-93973200 Weak transcription Fetal Intestine Small intestine
6 chr1:93950400-93974800 Weak transcription HepG2 liver
7 chr1:93951000-93972800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
8 chr1:93952600-93973600 Weak transcription Brain Germinal Matrix brain
9 chr1:93954200-93968000 Weak transcription Sigmoid Colon Sigmoid Colon
10 chr1:93954400-93967000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
11 chr1:93956200-93974000 Weak transcription HMEC breast
12 chr1:93956400-93975200 Weak transcription Fetal Stomach stomach
13 chr1:93956600-93967000 Weak transcription Rectal Mucosa Donor 31 rectum
14 chr1:93958000-93997200 Weak transcription HSMMtube muscle
15 chr1:93958800-93991800 Weak transcription Gastric stomach
16 chr1:93959000-93974800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
17 chr1:93960000-93968400 Weak transcription Small Intestine intestine
18 chr1:93960200-93974400 Weak transcription Primary hematopoietic stem cells blood
19 chr1:93960400-93970200 Weak transcription Cortex derived primary cultured neurospheres brain
20 chr1:93961000-93988400 Weak transcription HUVEC blood vessel
21 chr1:93962600-93984200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
22 chr1:93964000-93972800 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
23 chr1:93964400-93966800 Weak transcription ES-I3 Cell Line embryonic stem cell
24 chr1:93964400-93974800 Weak transcription H9 Cell Line embryonic stem cell
25 chr1:93964600-93968000 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
26 chr1:93964600-93968600 Strong transcription iPS-20b Cell Line embryonic stem cell
27 chr1:93964600-93973000 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
28 chr1:93964600-93990200 Weak transcription HSMM muscle
29 chr1:93964600-94015200 Weak transcription Fetal Brain Male brain
30 chr1:93964800-93974400 Weak transcription iPS-15b Cell Line embryonic stem cell
31 chr1:93964800-93974600 Weak transcription Fetal Muscle Leg muscle
32 chr1:93965000-93968000 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
33 chr1:93965000-93968600 Weak transcription Duodenum Smooth Muscle Duodenum
34 chr1:93965000-94013200 Weak transcription Adipose Nuclei Adipose
35 chr1:93965000-94017400 Weak transcription Stomach Mucosa stomach
36 chr1:93965200-93967000 Strong transcription HUES64 Cell Line embryonic stem cell
37 chr1:93965200-93974200 Weak transcription Fetal Muscle Trunk muscle
38 chr1:93965200-93974600 Weak transcription Fetal Kidney kidney
39 chr1:93965200-93974800 Weak transcription Fetal Adrenal Gland Adrenal Gland
40 chr1:93965200-93984600 Weak transcription Duodenum Mucosa Duodenum
41 chr1:93965200-93984800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
42 chr1:93965400-93967400 Strong transcription HUES48 Cell Line embryonic stem cell
43 chr1:93965400-93983600 Weak transcription Pancreatic Islets Pancreatic Islet
44 chr1:93965600-93968600 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
45 chr1:93965800-93967200 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
46 chr1:93965800-93967200 Strong transcription Fetal Intestine Large intestine
47 chr1:93965800-93968600 Strong transcription iPS-18 Cell Line embryonic stem cell
48 chr1:93965800-93970400 Strong transcription HUES6 Cell Line embryonic stem cell
49 chr1:93965800-93974400 Weak transcription Fetal Brain Female brain
50 chr1:93965800-93974800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived

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Last update: Aug 31, 2015