Variant report

Variant	rs540157002
Chromosome Location	chr4:147972561-147972562
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880240	chr4:147905897-148032003	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1016598	chr4:147931134-148012064	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv968013	chr4:147971119-147974814	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:147970600-147972800	Enhancers	Psoas Muscle	Psoas
2	chr4:147970600-147972800	Enhancers	Hela-S3	cervix
3	chr4:147970800-147972600	Enhancers	Fetal Lung	lung
4	chr4:147971600-147972800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr4:147971600-147978400	Weak transcription	Aorta	Aorta
6	chr4:147971600-147978400	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr4:147972000-147972600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr4:147972000-147973600	Weak transcription	HMEC	breast
9	chr4:147972000-147973600	Weak transcription	NHEK	skin
10	chr4:147972200-147978000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr4:147972400-147972600	Active TSS	Fetal Heart	heart
12	chr4:147972400-147978600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links