Variant report

Variant	rs540162672
Chromosome Location	chr10:43300221-43300222
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:43278278..43279935-chr10:43297692..43300575,2	K562	blood:
2	chr10:43283711..43286231-chr10:43299028..43301664,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RET-4	chr10:43299977-43300625	l_299_chr10:43299976-43307499_brain

Extended variants
information (count: 14 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550672	chr10:42753190-43441729	Bivalent Enhancer Genic enhancers Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv533331	chr10:42830221-43356410	ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
3	nsv1042764	chr10:42846383-43511712	Flanking Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
4	nsv1050394	chr10:42890663-43604956	Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
5	nsv540573	chr10:42890663-43604956	Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
6	nsv534548	chr10:42890664-43729688	Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
7	esv2758216	chr10:42965131-43510191	Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
8	esv2759746	chr10:42965131-43510191	Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
9	esv2757381	chr10:43104068-43352995	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
10	esv34929	chr10:43116194-43329770	Weak transcription Bivalent Enhancer Strong transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
11	nsv895076	chr10:43234432-43326627	Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
12	nsv1047838	chr10:43234590-43379219	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
13	nsv430159	chr10:43291894-43946294	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
14	nsv947891	chr10:43299039-43319274	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:43279800-43300600	Strong transcription	NH-A	brain
2	chr10:43279800-43302000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr10:43279800-43302600	Strong transcription	HUES6 Cell Line	embryonic stem cell
4	chr10:43279800-43303400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
5	chr10:43279800-43303400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr10:43279800-43303400	Strong transcription	Rectal Mucosa Donor 29	rectum
7	chr10:43279800-43303800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
8	chr10:43279800-43303800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr10:43279800-43305000	Strong transcription	Primary B cells from peripheral blood	blood
10	chr10:43279800-43306200	Strong transcription	HUES48 Cell Line	embryonic stem cell
11	chr10:43279800-43306400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
12	chr10:43279800-43307600	Strong transcription	HUES64 Cell Line	embryonic stem cell
13	chr10:43279800-43307800	Strong transcription	Primary T cells fromperipheralblood	blood
14	chr10:43279800-43307800	Strong transcription	Monocytes-CD14+_RO01746	blood
15	chr10:43279800-43308400	Strong transcription	Fetal Intestine Large	intestine
16	chr10:43279800-43308800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr10:43279800-43309000	Strong transcription	Primary monocytes fromperipheralblood	blood
18	chr10:43279800-43324000	Strong transcription	Liver	Liver
19	chr10:43279800-43328200	Strong transcription	Primary T helper cells fromperipheralblood	blood
20	chr10:43280000-43301600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr10:43280000-43301800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr10:43280000-43301800	Strong transcription	Duodenum Smooth Muscle	Duodenum
23	chr10:43280000-43303200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr10:43280000-43303600	Strong transcription	Rectal Mucosa Donor 31	rectum
25	chr10:43280000-43303600	Strong transcription	HSMM	muscle
26	chr10:43280000-43303600	Strong transcription	Osteobl	bone
27	chr10:43280000-43303800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr10:43280000-43304600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr10:43280000-43305000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr10:43280000-43305800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr10:43280000-43306400	Strong transcription	Placenta	Placenta
32	chr10:43280000-43306400	Strong transcription	A549	lung
33	chr10:43280000-43306800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr10:43280000-43309600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr10:43280000-43310800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr10:43280200-43306000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
37	chr10:43280200-43310600	Strong transcription	Primary T cells from cord blood	blood
38	chr10:43281000-43303200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr10:43281000-43308600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr10:43281800-43306800	Strong transcription	Dnd41	blood
41	chr10:43282400-43308200	Strong transcription	Primary T helper cells PMA-I stimulated	--
42	chr10:43284200-43306400	Strong transcription	Sigmoid Colon	Sigmoid Colon
43	chr10:43284400-43306400	Strong transcription	Primary hematopoietic stem cells	blood
44	chr10:43285800-43303200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr10:43286000-43303000	Strong transcription	Muscle Satellite Cultured Cells	--
46	chr10:43286200-43302000	Strong transcription	HepG2	liver
47	chr10:43287000-43301600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr10:43287600-43300400	Strong transcription	Hela-S3	cervix
49	chr10:43287800-43302400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr10:43291200-43301600	Strong transcription	HMEC	breast

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