Variant report

Variant	rs540179939
Chromosome Location	chr11:75378658-75378659
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:75271851..75274774-chr11:75376979..75378673,2	K562	blood:

Variant related genes	Relation type
ENSG00000149257	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3381903	chr11:75123498-75587233	Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases
2	esv3428029	chr11:75377804-75381602	Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75376600-75380200	Active TSS	Brain Inferior Temporal Lobe	brain
2	chr11:75376600-75380600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
3	chr11:75377600-75379400	Bivalent/Poised TSS	Fetal Intestine Small	intestine
4	chr11:75377800-75379400	Bivalent/Poised TSS	Fetal Stomach	stomach
5	chr11:75377800-75380400	Active TSS	Pancreatic Islets	Pancreatic Islet
6	chr11:75378000-75378800	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
7	chr11:75378000-75378800	Bivalent Enhancer	Spleen	Spleen
8	chr11:75378000-75379400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr11:75378000-75379400	Bivalent Enhancer	Primary B cells from peripheral blood	blood
10	chr11:75378000-75379400	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
11	chr11:75378000-75379400	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
12	chr11:75378000-75380200	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
13	chr11:75378000-75380200	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr11:75378000-75380400	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
15	chr11:75378000-75380400	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
16	chr11:75378000-75380400	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr11:75378000-75380400	Flanking Active TSS	Stomach Smooth Muscle	stomach
18	chr11:75378200-75378800	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
19	chr11:75378200-75378800	Bivalent/Poised TSS	Primary T cells from cord blood	blood
20	chr11:75378200-75378800	Bivalent Enhancer	Primary T helper naive cells from peripheral blood	blood
21	chr11:75378200-75378800	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
22	chr11:75378200-75378800	Flanking Active TSS	Pancreas	Pancrea
23	chr11:75378200-75378800	Bivalent Enhancer	Small Intestine	intestine
24	chr11:75378200-75379000	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
25	chr11:75378200-75379000	Flanking Bivalent TSS/Enh	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr11:75378200-75379000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells short term culture	blood
27	chr11:75378200-75379000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr11:75378200-75379000	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr11:75378200-75379000	Bivalent/Poised TSS	Fetal Lung	lung
30	chr11:75378200-75379000	Flanking Bivalent TSS/Enh	Rectal Mucosa Donor 29	rectum
31	chr11:75378200-75379000	Flanking Bivalent TSS/Enh	GM12878-XiMat	blood
32	chr11:75378200-75379400	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
33	chr11:75378200-75379400	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
34	chr11:75378200-75379400	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
35	chr11:75378200-75379400	Bivalent/Poised TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr11:75378200-75379400	Bivalent/Poised TSS	Muscle Satellite Cultured Cells	--
37	chr11:75378200-75379400	Bivalent Enhancer	Placenta	Placenta
38	chr11:75378200-75379400	Bivalent/Poised TSS	NHEK	skin
39	chr11:75378200-75379600	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr11:75378200-75380000	Flanking Bivalent TSS/Enh	Colonic Mucosa	Colon
41	chr11:75378200-75380000	Bivalent/Poised TSS	HepG2	liver
42	chr11:75378200-75380200	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
43	chr11:75378200-75380200	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
44	chr11:75378200-75380200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr11:75378200-75380200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr11:75378200-75380200	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr11:75378200-75380200	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr11:75378200-75380400	Active TSS	Colon Smooth Muscle	Colon
49	chr11:75378200-75380800	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
50	chr11:75378400-75378800	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--

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