Variant report

Variant	rs540180694
Chromosome Location	chr6:5724128-5724129
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:5721926..5724566-chr6:5725553..5727803,3	K562	blood:

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3409017	chr6:5723604-5724486	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:5717400-5729000	Weak transcription	Fetal Stomach	stomach
2	chr6:5717600-5729000	Weak transcription	Fetal Lung	lung
3	chr6:5717600-5729600	Weak transcription	Brain Substantia Nigra	brain
4	chr6:5717800-5725600	Weak transcription	Fetal Intestine Small	intestine
5	chr6:5718000-5729200	Weak transcription	NHEK	skin
6	chr6:5722400-5724600	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr6:5722800-5724800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:5722800-5724800	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr6:5722800-5724800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr6:5722800-5725000	Enhancers	H1 Cell Line	embryonic stem cell
11	chr6:5722800-5725000	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr6:5722800-5725000	Enhancers	Placenta	Placenta
13	chr6:5723000-5724200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr6:5723000-5744200	Weak transcription	Right Ventricle	heart
15	chr6:5723200-5724400	Enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr6:5723200-5724400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
17	chr6:5723200-5725000	Enhancers	Fetal Muscle Leg	muscle
18	chr6:5723400-5724600	Enhancers	H9 Cell Line	embryonic stem cell
19	chr6:5723400-5724600	Enhancers	Cortex derived primary cultured neurospheres	brain
20	chr6:5723600-5724200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr6:5723600-5724200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr6:5723600-5724200	Enhancers	iPS-20b Cell Line	embryonic stem cell
23	chr6:5723600-5724200	Enhancers	Primary T helper cells fromperipheralblood	blood
24	chr6:5723600-5724200	Enhancers	Brain Germinal Matrix	brain
25	chr6:5723600-5724200	Enhancers	Fetal Thymus	thymus
26	chr6:5723600-5724400	Enhancers	Primary T cells fromperipheralblood	blood
27	chr6:5723600-5724600	Enhancers	ES-I3 Cell Line	embryonic stem cell
28	chr6:5723600-5724600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr6:5723600-5724600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr6:5723600-5724600	Enhancers	HUES48 Cell Line	embryonic stem cell
31	chr6:5723600-5724800	Enhancers	iPS-15b Cell Line	embryonic stem cell
32	chr6:5723600-5724800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
33	chr6:5723600-5725000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr6:5723600-5725200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
35	chr6:5723800-5724200	Flanking Active TSS	GM12878-XiMat	blood
36	chr6:5723800-5724600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr6:5723800-5724600	Enhancers	Primary T helper cells PMA-I stimulated	--
38	chr6:5723800-5724600	Enhancers	NH-A	brain
39	chr6:5723800-5724800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr6:5723800-5725000	Flanking Active TSS	Primary B cells from cord blood	blood
41	chr6:5723800-5725000	Flanking Active TSS	Primary B cells from peripheral blood	blood
42	chr6:5723800-5729000	Weak transcription	Lung	lung
43	chr6:5724000-5724200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr6:5724000-5724400	Active TSS	Primary T cells from cord blood	blood
45	chr6:5724000-5724400	Active TSS	Primary hematopoietic stem cells	blood
46	chr6:5724000-5724400	Enhancers	Thymus	Thymus
47	chr6:5724000-5724600	Enhancers	Fetal Brain Male	brain
48	chr6:5724000-5724800	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
49	chr6:5724000-5724800	Active TSS	Primary T helper naive cells fromperipheralblood	blood
50	chr6:5724000-5725000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood

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