Variant report

Variant	rs540182155
Chromosome Location	chr11:59383495-59383496
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAFK	chr11:59383436-59384014	HepG2	liver:	n/a	n/a
2	BHLHE40	chr11:59383108-59384395	GM12878	blood:	n/a	chr11:59383252-59383268
3	RELA	chr11:59382506-59384310	GM12891	blood:	n/a	n/a
4	SP2	chr11:59382977-59384168	HepG2	liver:	n/a	chr11:59383424-59383447 chr11:59383441-59383451 chr11:59383876-59383886 chr11:59383542-59383565 chr11:59383744-59383767 chr11:59383538-59383548 chr11:59383304-59383327
5	TCF7L2	chr11:59382617-59384072	HCT-116	colon:	n/a	n/a
6	POLR2A	chr11:59382269-59384201	K562	blood:	n/a	n/a
7	SIN3AK20	chr11:59383136-59383792	H1-hESC	embryonic stem cell:	n/a	n/a
8	POLR2A	chr11:59382265-59383538	MCF-7	breast:	n/a	n/a
9	TAF1	chr11:59382905-59383602	ECC-1	luminal epithelium:	n/a	n/a
10	ATF3	chr11:59383031-59383774	K562	blood:	n/a	chr11:59383244-59383253 chr11:59383589-59383609
11	FOSL2	chr11:59383447-59383723	A549	lung:	n/a	n/a
12	ARID3A	chr11:59383035-59384303	HepG2	liver:	n/a	n/a
13	SP1	chr11:59382996-59384423	HCT-116	colon:	n/a	chr11:59383247-59383259 chr11:59383731-59383752 chr11:59383903-59383913 chr11:59383597-59383608 chr11:59383242-59383254 chr11:59383772-59383786 chr11:59383243-59383252 chr11:59383903-59383913 chr11:59383203-59383216 chr11:59383243-59383252 chr11:59383248-59383257 chr11:59383874-59383895 chr11:59383529-59383550 chr11:59383413-59383434 chr11:59383777-59383786 chr11:59383626-59383637 chr11:59383244-59383253
14	IRF1	chr11:59383088-59384322	K562	blood:	n/a	chr11:59383540-59383549 chr11:59383728-59383742 chr11:59383240-59383254
15	MAX	chr11:59382993-59384199	MCF-7	breast:	n/a	chr11:59383763-59383774 chr11:59383763-59383774 chr11:59384079-59384089
16	MAX	chr11:59383413-59384059	H1-hESC	embryonic stem cell:	n/a	chr11:59383763-59383774 chr11:59383763-59383774
17	CREB1	chr11:59382978-59384086	ECC-1	luminal epithelium:	n/a	chr11:59383587-59383600
18	BRCA1	chr11:59383200-59383711	H1-hESC	embryonic stem cell:	n/a	n/a
19	GABPA	chr11:59382997-59383801	HL-60	blood:	n/a	n/a
20	FOXP2	chr11:59383013-59383653	PFSK-1	brain:	n/a	n/a
21	RELA	chr11:59383220-59384247	GM19099	blood:	n/a	n/a
22	TBP	chr11:59383305-59384139	Hela-S3	cervix:	n/a	n/a
23	CHD2	chr11:59383093-59384133	K562	blood:	n/a	n/a
24	RUNX3	chr11:59382963-59384106	GM12878	blood:	n/a	n/a
25	POLR2A	chr11:59382967-59384215	HUVEC	blood vessel:	n/a	n/a
26	CHD2	chr11:59382454-59384139	Hela-S3	cervix:	n/a	n/a
27	ELK1	chr11:59383113-59384055	Hela-S3	cervix:	n/a	n/a
28	POLR2A	chr11:59383494-59384388	K562	blood:	n/a	n/a
29	SIN3AK20	chr11:59382982-59383650	SK-N-SH	brain:	n/a	n/a
30	CREB1	chr11:59382593-59384228	GM12878	blood:	n/a	chr11:59383587-59383600
31	SP1	chr11:59383055-59384169	GM12878	blood:	n/a	chr11:59383247-59383259 chr11:59383731-59383752 chr11:59383903-59383913 chr11:59383597-59383608 chr11:59383242-59383254 chr11:59383772-59383786 chr11:59383243-59383252 chr11:59383903-59383913 chr11:59383203-59383216 chr11:59383243-59383252 chr11:59383248-59383257 chr11:59383874-59383895 chr11:59383529-59383550 chr11:59383413-59383434 chr11:59383777-59383786 chr11:59383626-59383637 chr11:59383244-59383253
32	SP2	chr11:59383017-59384017	H1-hESC	embryonic stem cell:	n/a	chr11:59383424-59383447 chr11:59383441-59383451 chr11:59383876-59383886 chr11:59383542-59383565 chr11:59383744-59383767 chr11:59383538-59383548 chr11:59383304-59383327
33	MAFK	chr11:59383074-59384125	Hela-S3	cervix:	n/a	n/a
34	POLR2A	chr11:59382903-59383509	Gliobla	brain:	n/a	n/a
35	TEAD4	chr11:59383177-59383775	H1-hESC	embryonic stem cell:	n/a	n/a
36	FOS	chr11:59383204-59383940	MCF10A-Er-Src	breast:	n/a	chr11:59383442-59383451 chr11:59383245-59383254
37	USF2	chr11:59383323-59384282	Hela-S3	cervix:	n/a	n/a
38	GABPA	chr11:59383085-59383652	GM12878	blood:	n/a	n/a
39	MYC	chr11:59382388-59384323	NB4	blood:	n/a	chr11:59383763-59383774 chr11:59383763-59383774 chr11:59384079-59384089
40	ELF1	chr11:59382551-59384345	K562	blood:	n/a	chr11:59382687-59382699
41	GABPA	chr11:59382476-59383934	MCF-7	breast:	n/a	n/a
42	HCFC1	chr11:59382375-59384474	Hela-S3	cervix:	n/a	n/a
43	USF2	chr11:59383459-59384091	H1-hESC	embryonic stem cell:	n/a	n/a
44	RFX5	chr11:59383139-59384352	Hela-S3	cervix:	n/a	chr11:59383441-59383450 chr11:59383539-59383548 chr11:59383423-59383432
45	ELF1	chr11:59382450-59383632	GM12878	blood:	n/a	chr11:59382687-59382699
46	SP2	chr11:59382958-59384118	HepG2	liver:	n/a	chr11:59383424-59383447 chr11:59383441-59383451 chr11:59383876-59383886 chr11:59383542-59383565 chr11:59383744-59383767 chr11:59383538-59383548 chr11:59383304-59383327
47	ZC3H11A	chr11:59383462-59383820	K562	blood:	n/a	n/a
48	CHD2	chr11:59383015-59384265	GM12878	blood:	n/a	n/a
49	TEAD4	chr11:59383116-59383771	ECC-1	luminal epithelium:	n/a	n/a
50	MYC	chr11:59381776-59384318	K562	blood:	n/a	chr11:59383763-59383774 chr11:59383763-59383774 chr11:59384079-59384089

No.	Distal block	Cell Line	Cell type
1	chr11:59380013..59385486-chr11:59434648..59438262,9	MCF-7	breast:
2	chr11:59382346..59384021-chr11:59576839..59579644,2	K562	blood:
3	chr11:59381725..59384642-chr11:59521273..59522941,2	K562	blood:
4	chr11:59382728..59383524-chr6:31783159..31783746,2	Hela-S3	cervix:
5	chr11:59373266..59379105-chr11:59379660..59383510,5	MCF-7	breast:
6	chr11:59379597..59385439-chr11:59434812..59438230,12	K562	blood:
7	chr11:59381899..59384726-chr11:59386703..59391439,4	MCF-7	breast:
8	chr11:59382734..59385576-chr11:59440781..59442919,2	K562	blood:
9	chr11:59332034..59337600-chr11:59380778..59383923,5	K562	blood:
10	chr11:59381028..59383632-chr11:59387004..59389826,3	K562	blood:
11	chr11:59324538..59326283-chr11:59383295..59385264,2	K562	blood:
12	chr11:59367319..59373347-chr11:59375671..59384148,16	K562	blood:
13	chr11:59381143..59385193-chr11:59434975..59438411,10	K562	blood:
14	chr11:59367491..59370423-chr11:59380896..59384148,4	K562	blood:
15	chr11:59327475..59330060-chr11:59381628..59383602,2	K562	blood:

Variant related genes	Relation type
ENSG00000255139	TF binding region
ENSG00000204389	Chromatin interaction
ENSG00000252893	Chromatin interaction
ENSG00000255355	Chromatin interaction
ENSG00000166902	Chromatin interaction
ENSG00000255139	Chromatin interaction
ENSG00000166889	Chromatin interaction
ENSG00000110048	Chromatin interaction
ENSG00000166900	Chromatin interaction
ENSG00000254477	Chromatin interaction
ENSG00000204390	Chromatin interaction
ENSG00000255008	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1833978	chr11:59377543-59383631	Strong transcription Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	esv1842135	chr11:59377543-59383631	Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Genic enhancers Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	esv3356175	chr11:59382001-59384549	Weak transcription Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	esv1795788	chr11:59382306-59383787	Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	esv1803734	chr11:59382306-59383787	Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
6	nsv555148	chr11:59382306-59383823	Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
7	esv17260	chr11:59383294-59383871	Weak transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
8	nsv555149	chr11:59383323-59383823	Active TSS Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
9	esv1797571	chr11:59383323-59424688	Strong transcription Flanking Active TSS Weak transcription Active TSS Genic enhancers Enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
10	esv1797737	chr11:59383323-59424688	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
11	esv1802782	chr11:59383323-59448068	Genic enhancers Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59380000-59384400	Active TSS	Psoas Muscle	Psoas
2	chr11:59380600-59384400	Active TSS	Fetal Muscle Trunk	muscle
3	chr11:59381400-59384400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr11:59381400-59384400	Active TSS	Aorta	Aorta
5	chr11:59381400-59384400	Active TSS	Ovary	ovary
6	chr11:59381400-59384600	Active TSS	Pancreatic Islets	Pancreatic Islet
7	chr11:59381600-59384000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr11:59381600-59384400	Active TSS	HUES6 Cell Line	embryonic stem cell
9	chr11:59381600-59384400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr11:59381800-59384000	Active TSS	GM12878-XiMat	blood
11	chr11:59381800-59384000	Active TSS	K562	blood
12	chr11:59381800-59384000	Active TSS	NHDF-Ad	bronchial
13	chr11:59381800-59384200	Active TSS	Fetal Intestine Small	intestine
14	chr11:59381800-59384400	Active TSS	H1 Cell Line	embryonic stem cell
15	chr11:59381800-59384400	Active TSS	HUES48 Cell Line	embryonic stem cell
16	chr11:59381800-59384400	Active TSS	Left Ventricle	heart
17	chr11:59382000-59384000	Active TSS	HMEC	breast
18	chr11:59382000-59384000	Active TSS	HSMMtube	muscle
19	chr11:59382000-59384200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr11:59382000-59384200	Active TSS	Pancreas	Pancrea
21	chr11:59382000-59384400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
22	chr11:59382000-59384400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr11:59382000-59384400	Active TSS	Esophagus	oesophagus
24	chr11:59382200-59384000	Active TSS	Muscle Satellite Cultured Cells	--
25	chr11:59382200-59384200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr11:59382200-59384400	Active TSS	ES-I3 Cell Line	embryonic stem cell
27	chr11:59382200-59384400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr11:59382200-59384400	Active TSS	Lung	lung
29	chr11:59382200-59384400	Active TSS	Small Intestine	intestine
30	chr11:59382200-59384600	Active TSS	HUES64 Cell Line	embryonic stem cell
31	chr11:59382200-59384800	Active TSS	A549	lung
32	chr11:59382400-59384000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr11:59382400-59384000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr11:59382400-59384000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr11:59382400-59384000	Active TSS	Placenta	Placenta
36	chr11:59382400-59384000	Active TSS	Rectal Smooth Muscle	rectum
37	chr11:59382400-59384000	Active TSS	Hela-S3	cervix
38	chr11:59382400-59384000	Active TSS	HSMM	muscle
39	chr11:59382400-59384000	Active TSS	NH-A	brain
40	chr11:59382400-59384000	Active TSS	NHLF	lung
41	chr11:59382400-59384000	Active TSS	Osteobl	bone
42	chr11:59382400-59384200	Active TSS	H9 Cell Line	embryonic stem cell
43	chr11:59382400-59384200	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr11:59382400-59384200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr11:59382400-59384200	Active TSS	Brain Hippocampus Middle	brain
46	chr11:59382400-59384200	Active TSS	Brain Inferior Temporal Lobe	brain
47	chr11:59382400-59384200	Active TSS	Fetal Intestine Large	intestine
48	chr11:59382400-59384200	Active TSS	Skeletal Muscle Male	skeletal muscle
49	chr11:59382400-59384200	Active TSS	NHEK	skin
50	chr11:59382400-59384400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links