The 2.0 version of rSNPBase

Variant report

Variant rs540195882
Chromosome Location chr5:16524917-16524918
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:43 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:16509600-16528800 Weak transcription Brain Hippocampus Middle brain
2 chr5:16516000-16540800 Weak transcription Primary T killer memory cells from peripheral blood blood
3 chr5:16519800-16531400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
4 chr5:16520200-16525000 Weak transcription Gastric stomach
5 chr5:16521600-16539600 Weak transcription Breast Myoepithelial Primary Cells Breast
6 chr5:16522200-16525400 Weak transcription Lung lung
7 chr5:16522200-16528800 Weak transcription Pancreatic Islets Pancreatic Islet
8 chr5:16522400-16529000 Weak transcription Stomach Mucosa stomach
9 chr5:16522400-16567400 Weak transcription Primary mononuclear cells fromperipheralblood Blood
10 chr5:16522600-16528400 Weak transcription Duodenum Mucosa Duodenum
11 chr5:16522600-16530000 Weak transcription Right Atrium heart
12 chr5:16523000-16525000 Enhancers Primary T helper cells PMA-I stimulated --
13 chr5:16523400-16525800 Enhancers Skeletal Muscle Female skeletal muscle
14 chr5:16523400-16540800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
15 chr5:16523600-16533800 Weak transcription Primary T helper cells fromperipheralblood blood
16 chr5:16523600-16535400 Weak transcription Pancreas Pancrea
17 chr5:16523800-16528600 Weak transcription Fetal Intestine Large intestine
18 chr5:16523800-16539000 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
19 chr5:16523800-16540800 Weak transcription Primary T helper naive cells from peripheral blood blood
20 chr5:16524000-16525600 Enhancers Left Ventricle heart
21 chr5:16524000-16525800 Enhancers Fetal Brain Male brain
22 chr5:16524000-16526400 Enhancers Primary T cells fromperipheralblood blood
23 chr5:16524200-16525000 Enhancers Brain Angular Gyrus brain
24 chr5:16524200-16525000 Enhancers Skeletal Muscle Male skeletal muscle
25 chr5:16524200-16526200 Genic enhancers Primary T cells from cord blood blood
26 chr5:16524200-16526600 Enhancers Brain Cingulate Gyrus brain
27 chr5:16524200-16528600 Weak transcription Rectal Mucosa Donor 29 rectum
28 chr5:16524200-16528600 Weak transcription Rectal Mucosa Donor 31 rectum
29 chr5:16524400-16525600 Weak transcription Fetal Intestine Small intestine
30 chr5:16524400-16526000 Weak transcription Fetal Heart heart
31 chr5:16524400-16526400 Weak transcription Colonic Mucosa Colon
32 chr5:16524400-16526800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
33 chr5:16524400-16529600 Weak transcription Psoas Muscle Psoas
34 chr5:16524400-16529800 Weak transcription Brain Substantia Nigra brain
35 chr5:16524600-16525000 Weak transcription Primary T killer naive cells fromperipheralblood blood
36 chr5:16524600-16525800 Enhancers Fetal Muscle Leg muscle
37 chr5:16524600-16526200 Enhancers Brain Inferior Temporal Lobe brain
38 chr5:16524600-16531800 Weak transcription Small Intestine intestine
39 chr5:16524600-16533800 Weak transcription Right Ventricle heart
40 chr5:16524800-16525000 Enhancers Sigmoid Colon Sigmoid Colon
41 chr5:16524800-16525200 Enhancers Fetal Brain Female brain
42 chr5:16524800-16525800 Genic enhancers Primary T helper naive cells fromperipheralblood blood
43 chr5:16524800-16527200 Strong transcription Thymus Thymus

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Last update: Aug 31, 2015