Variant report

Variant	rs540202469
Chromosome Location	chr10:112838306-112838307
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:112837126..112840004-chr10:112842044..112844644,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498045	chr10:112794518-113353550	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv825566	chr10:112830014-112871333	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv527400	chr10:112833561-112843085	Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Transcr. at gene 5' and 3' Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv896004	chr10:112834763-112842961	Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv3321787	chr10:112835962-112840760	Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv896005	chr10:112835992-112846298	Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv3377744	chr10:112837487-112840335	Bivalent/Poised TSS Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv3426722	chr10:112837812-112839710	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:112835600-112838400	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
2	chr10:112835600-112838400	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
3	chr10:112835600-112838400	Flanking Bivalent TSS/Enh	Stomach Smooth Muscle	stomach
4	chr10:112835600-112839000	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
5	chr10:112835600-112839000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
6	chr10:112835800-112838400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
7	chr10:112835800-112838400	Bivalent/Poised TSS	Colon Smooth Muscle	Colon
8	chr10:112835800-112838400	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
9	chr10:112835800-112838400	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
10	chr10:112835800-112840400	Active TSS	Pancreatic Islets	Pancreatic Islet
11	chr10:112836000-112838400	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
12	chr10:112836000-112839200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr10:112836200-112838400	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
14	chr10:112836400-112838400	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
15	chr10:112836400-112838400	Bivalent/Poised TSS	Fetal Intestine Small	intestine
16	chr10:112836800-112838400	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
17	chr10:112836800-112839200	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
18	chr10:112837000-112838400	Flanking Bivalent TSS/Enh	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr10:112837000-112839400	Bivalent/Poised TSS	Fetal Brain Female	brain
20	chr10:112837200-112838400	Bivalent Enhancer	Primary B cells from peripheral blood	blood
21	chr10:112837200-112839600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
22	chr10:112837400-112838400	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
23	chr10:112837400-112838400	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr10:112837600-112838400	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr10:112837600-112838400	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr10:112837600-112838400	Flanking Bivalent TSS/Enh	Brain Cingulate Gyrus	brain
27	chr10:112837600-112838400	Flanking Bivalent TSS/Enh	Lung	lung
28	chr10:112837600-112838400	Flanking Bivalent TSS/Enh	Spleen	Spleen
29	chr10:112837600-112838600	Flanking Bivalent TSS/Enh	Esophagus	oesophagus
30	chr10:112837600-112839000	Flanking Bivalent TSS/Enh	Right Ventricle	heart
31	chr10:112837600-112839600	Bivalent Enhancer	Placenta	Placenta
32	chr10:112837800-112838400	Flanking Bivalent TSS/Enh	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr10:112837800-112838400	Flanking Bivalent TSS/Enh	Primary T cells from cord blood	blood
34	chr10:112837800-112838400	Flanking Bivalent TSS/Enh	Brain Inferior Temporal Lobe	brain
35	chr10:112837800-112838400	Flanking Bivalent TSS/Enh	Duodenum Mucosa	Duodenum
36	chr10:112837800-112838400	Bivalent/Poised TSS	Fetal Brain Male	brain
37	chr10:112837800-112838400	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
38	chr10:112837800-112838400	Flanking Bivalent TSS/Enh	Rectal Mucosa Donor 29	rectum
39	chr10:112837800-112838400	Bivalent Enhancer	Sigmoid Colon	Sigmoid Colon
40	chr10:112837800-112838600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr10:112837800-112838600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr10:112837800-112838600	Flanking Active TSS	Ovary	ovary
43	chr10:112838000-112838400	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
44	chr10:112838000-112838400	Flanking Bivalent TSS/Enh	Fetal Intestine Large	intestine
45	chr10:112838000-112838400	Flanking Bivalent TSS/Enh	Fetal Lung	lung
46	chr10:112838000-112838400	Bivalent Enhancer	Left Ventricle	heart
47	chr10:112838000-112838400	Flanking Active TSS	Psoas Muscle	Psoas
48	chr10:112838000-112838400	Enhancers	Right Atrium	heart
49	chr10:112838000-112838400	Bivalent Enhancer	Thymus	Thymus
50	chr10:112838000-112838400	Bivalent Enhancer	NH-A	brain

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