Variant report

Variant	rs540208159
Chromosome Location	chr11:35396003-35396004
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CD44-6	chr11:35395812-35396021	NONHSAT018790

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832120	chr11:35277410-35490304	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv2758264	chr11:35319320-35480522	Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv2759819	chr11:35319320-35480522	Weak transcription Bivalent/Poised TSS Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv430372	chr11:35376124-35430324	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv975902	chr11:35395783-35397146	Weak transcription Strong transcription Genic enhancers Enhancers	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:35386400-35398600	Weak transcription	Fetal Brain Female	brain
2	chr11:35389000-35406400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr11:35389200-35408600	Weak transcription	Aorta	Aorta
4	chr11:35389800-35398400	Weak transcription	NHLF	lung
5	chr11:35389800-35398400	Weak transcription	Osteobl	bone
6	chr11:35390400-35401800	Weak transcription	Right Atrium	heart
7	chr11:35390600-35399000	Weak transcription	Brain Substantia Nigra	brain
8	chr11:35390600-35401800	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr11:35392400-35402600	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr11:35393200-35398400	Weak transcription	Brain Angular Gyrus	brain
11	chr11:35393800-35396200	Enhancers	Hela-S3	cervix
12	chr11:35395000-35401800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr11:35395200-35398400	Weak transcription	Stomach Smooth Muscle	stomach
14	chr11:35395200-35398800	Weak transcription	Brain Hippocampus Middle	brain
15	chr11:35395200-35399200	Weak transcription	Brain Anterior Caudate	brain
16	chr11:35395400-35396800	Weak transcription	GM12878-XiMat	blood
17	chr11:35395400-35397000	Weak transcription	Stomach Mucosa	stomach
18	chr11:35395400-35398400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr11:35395400-35398800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr11:35395400-35398800	Weak transcription	Fetal Muscle Leg	muscle
21	chr11:35395400-35399600	Weak transcription	Brain Cingulate Gyrus	brain
22	chr11:35395600-35397200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr11:35395600-35397200	Weak transcription	NHDF-Ad	bronchial
24	chr11:35395600-35401000	Weak transcription	Psoas Muscle	Psoas
25	chr11:35395600-35401000	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr11:35395600-35401000	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr11:35395800-35396800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr11:35395800-35397000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr11:35395800-35398400	Weak transcription	Pancreas	Pancrea
30	chr11:35396000-35401800	Weak transcription	Left Ventricle	heart

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