Variant report

Variant rs540219270
Chromosome Location chr7:27153177-27153178
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:81 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr7:27145800-27162800 Strong transcription Primary hematopoietic stem cells short term culture blood
2 chr7:27146400-27169600 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
3 chr7:27146800-27159000 Weak transcription Primary hematopoietic stem cells blood
4 chr7:27149000-27153200 Enhancers NHDF-Ad bronchial
5 chr7:27150000-27153400 Flanking Active TSS Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
6 chr7:27150000-27158400 Active TSS Aorta Aorta
7 chr7:27150400-27154600 Bivalent/Poised TSS NH-A brain
8 chr7:27151000-27158200 Active TSS Breast Myoepithelial Primary Cells Breast
9 chr7:27151400-27154000 Active TSS Fetal Stomach stomach
10 chr7:27151400-27155000 Weak transcription HepG2 liver
11 chr7:27151600-27154000 Active TSS NHLF lung
12 chr7:27151600-27156000 Active TSS Fetal Kidney kidney
13 chr7:27151600-27156800 Bivalent/Poised TSS Fetal Lung lung
14 chr7:27151600-27159200 Active TSS Duodenum Smooth Muscle Duodenum
15 chr7:27151800-27153800 Active TSS HMEC breast
16 chr7:27151800-27157000 Active TSS Right Atrium heart
17 chr7:27152000-27154000 Active TSS Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
18 chr7:27152000-27154000 Active TSS Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
19 chr7:27152200-27153200 Flanking Active TSS Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
20 chr7:27152200-27153200 Bivalent/Poised TSS Fetal Thymus thymus
21 chr7:27152200-27154000 Active TSS Placenta Amnion Placenta Amnion
22 chr7:27152200-27154000 Active TSS A549 lung
23 chr7:27152400-27153200 Flanking Active TSS Adipose Nuclei Adipose
24 chr7:27152400-27153800 Bivalent/Poised TSS hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
25 chr7:27152600-27153200 Flanking Active TSS Muscle Satellite Cultured Cells --
26 chr7:27152600-27153200 Flanking Active TSS Colonic Mucosa Colon
27 chr7:27152600-27153200 Flanking Bivalent TSS/Enh Fetal Muscle Leg muscle
28 chr7:27152600-27153200 Flanking Active TSS Rectal Mucosa Donor 29 rectum
29 chr7:27152600-27153200 Flanking Active TSS Rectal Mucosa Donor 31 rectum
30 chr7:27152600-27153200 Flanking Active TSS Rectal Smooth Muscle rectum
31 chr7:27152600-27153200 Flanking Active TSS Hela-S3 cervix
32 chr7:27152600-27153800 Active TSS Skeletal Muscle Female skeletal muscle
33 chr7:27152600-27154000 Active TSS Stomach Mucosa stomach
34 chr7:27152600-27154000 Active TSS HSMM muscle
35 chr7:27152600-27154600 Bivalent Enhancer ES-UCSF4 Cell Line embryonic stem cell
36 chr7:27152600-27154800 Active TSS Fetal Muscle Trunk muscle
37 chr7:27152600-27157800 Active TSS H1 Derived Mesenchymal Stem Cells ES cell derived
38 chr7:27152600-27158000 Active TSS Esophagus oesophagus
39 chr7:27152800-27153200 Bivalent Enhancer iPS DF 19.11 Cell Line embryonic stem cell
40 chr7:27152800-27153200 Flanking Active TSS Fetal Intestine Large intestine
41 chr7:27152800-27153200 Flanking Bivalent TSS/Enh Fetal Intestine Small intestine
42 chr7:27152800-27153200 Bivalent Enhancer Placenta Placenta
43 chr7:27152800-27153200 Flanking Active TSS Stomach Smooth Muscle stomach
44 chr7:27152800-27153400 Bivalent Enhancer H1 Cell Line embryonic stem cell
45 chr7:27152800-27153400 Flanking Bivalent TSS/Enh Foreskin Fibroblast Primary Cells skin02 Skin
46 chr7:27152800-27153400 Flanking Active TSS Foreskin Melanocyte Primary Cells skin03 Skin
47 chr7:27152800-27153400 Active TSS Gastric stomach
48 chr7:27152800-27153400 Enhancers Pancreas Pancrea
49 chr7:27152800-27153600 Active TSS Ovary ovary
50 chr7:27152800-27153600 Active TSS Sigmoid Colon Sigmoid Colon

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