Variant report

Variant	rs540224245
Chromosome Location	chr7:127858349-127858350
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:127858029..127859044-chr7:127962044..127962840,5	MCF-7	breast:
2	chr7:127854529..127856623-chr7:127857622..127859528,2	MCF-7	breast:
3	chr7:127857539..127859442-chr7:127980846..127983357,2	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022385	chr7:127246656-127971194	Weak transcription Bivalent Enhancer Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv539120	chr7:127246656-127971194	Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	esv33413	chr7:127800064-127929303	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
4	nsv5945	chr7:127852004-127880768	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv429811	chr7:127857891-127889049	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:127844000-127875600	Weak transcription	Right Atrium	heart
2	chr7:127850000-127867400	Weak transcription	Spleen	Spleen
3	chr7:127854800-127858800	Enhancers	Osteobl	bone
4	chr7:127855000-127858800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr7:127855000-127858800	Enhancers	Adipose Nuclei	Adipose
6	chr7:127855200-127858600	Enhancers	Placenta	Placenta
7	chr7:127855800-127858600	Enhancers	Fetal Muscle Trunk	muscle
8	chr7:127856000-127863600	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr7:127856200-127859000	Enhancers	NHDF-Ad	bronchial
10	chr7:127856800-127858800	Enhancers	NHEK	skin
11	chr7:127857000-127858400	Enhancers	NHLF	lung
12	chr7:127857000-127858600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
13	chr7:127857000-127858600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
14	chr7:127857000-127858600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
15	chr7:127857200-127858400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr7:127857200-127858400	Enhancers	Hela-S3	cervix
17	chr7:127857400-127858400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr7:127857400-127858600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr7:127857400-127862200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr7:127857600-127858800	Enhancers	Primary B cells from cord blood	blood
21	chr7:127857800-127858400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr7:127857800-127858400	Flanking Active TSS	HSMM	muscle
23	chr7:127857800-127858800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr7:127857800-127860000	Enhancers	HMEC	breast
25	chr7:127858000-127858400	Flanking Active TSS	HSMMtube	muscle
26	chr7:127858000-127859000	Bivalent Enhancer	Fetal Muscle Leg	muscle
27	chr7:127858000-127861800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr7:127858200-127858800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links