Variant report

Variant	rs540232406
Chromosome Location	chr15:78685165-78685166
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529491	chr15:77932659-78751516	Genic enhancers Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv917303	chr15:78491050-79205255	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	122 gene(s)	inside rSNPs	diseases
3	nsv833063	chr15:78605215-78754945	Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers Genic enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv1052910	chr15:78608637-78707049	Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv1627	chr15:78683761-78728604	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:78667600-78704400	Weak transcription	Lung	lung
2	chr15:78681800-78688800	Weak transcription	Spleen	Spleen
3	chr15:78682200-78687400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr15:78682200-78687400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr15:78682200-78687400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr15:78682200-78687600	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr15:78682400-78686000	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr15:78682400-78686200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr15:78682400-78686200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr15:78682400-78686400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr15:78682400-78687000	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr15:78683800-78687400	Weak transcription	Placenta	Placenta
13	chr15:78684600-78685200	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr15:78684600-78685200	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr15:78684600-78685200	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr15:78684600-78685200	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr15:78684600-78685400	Enhancers	iPS-20b Cell Line	embryonic stem cell
18	chr15:78684800-78685200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr15:78684800-78686600	Weak transcription	Fetal Intestine Large	intestine
20	chr15:78685000-78686000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr15:78685000-78686200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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