Variant report

Variant rs540256488
Chromosome Location chr1:145215208-145215209
allele -/TC
Outlinks Ensembl   UCSC
Chromatin state (count:99 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:145210200-145230400 Weak transcription Spleen Spleen
2 chr1:145210400-145215400 Weak transcription Gastric stomach
3 chr1:145210600-145217000 Weak transcription ES-WA7 Cell Line embryonic stem cell
4 chr1:145210600-145217200 Enhancers Primary B cells from peripheral blood blood
5 chr1:145210600-145219200 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
6 chr1:145210800-145215400 Weak transcription K562 blood
7 chr1:145210800-145216000 Weak transcription Placenta Placenta
8 chr1:145210800-145216400 Enhancers Primary T helper cells fromperipheralblood blood
9 chr1:145210800-145220200 Weak transcription Fetal Muscle Trunk muscle
10 chr1:145210800-145220200 Weak transcription Right Ventricle heart
11 chr1:145211600-145215600 Weak transcription Fetal Muscle Leg muscle
12 chr1:145211600-145215800 Weak transcription Primary T cells fromperipheralblood blood
13 chr1:145211600-145219800 Weak transcription Brain Substantia Nigra brain
14 chr1:145211600-145246400 Weak transcription Primary Natural Killer cells fromperipheralblood blood
15 chr1:145211800-145219000 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
16 chr1:145211800-145219200 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
17 chr1:145211800-145219200 Weak transcription Duodenum Mucosa Duodenum
18 chr1:145211800-145219200 Weak transcription Rectal Mucosa Donor 31 rectum
19 chr1:145211800-145219200 Weak transcription Right Atrium heart
20 chr1:145211800-145220800 Weak transcription Primary mononuclear cells fromperipheralblood Blood
21 chr1:145211800-145223400 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
22 chr1:145212000-145218200 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
23 chr1:145212200-145219200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
24 chr1:145212200-145221800 Weak transcription Primary T regulatory cells fromperipheralblood blood
25 chr1:145212400-145216400 Enhancers Primary T helper 17 cells PMA-I stimulated --
26 chr1:145212400-145230200 Weak transcription Fetal Intestine Large intestine
27 chr1:145212800-145217400 Weak transcription Duodenum Smooth Muscle Duodenum
28 chr1:145212800-145219200 Weak transcription iPS-15b Cell Line embryonic stem cell
29 chr1:145212800-145241600 Weak transcription Fetal Stomach stomach
30 chr1:145213200-145216600 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
31 chr1:145213200-145219200 Weak transcription Thymus Thymus
32 chr1:145213400-145216400 Enhancers NHEK skin
33 chr1:145213400-145219000 Weak transcription HUES48 Cell Line embryonic stem cell
34 chr1:145213400-145219200 Weak transcription NHLF lung
35 chr1:145213400-145220200 Weak transcription Small Intestine intestine
36 chr1:145213600-145215400 Genic enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
37 chr1:145213600-145216000 Weak transcription Aorta Aorta
38 chr1:145213600-145216800 Weak transcription NHDF-Ad bronchial
39 chr1:145213600-145217800 Enhancers HMEC breast
40 chr1:145213600-145219200 Weak transcription Pancreas Pancrea
41 chr1:145213600-145219200 Weak transcription Rectal Smooth Muscle rectum
42 chr1:145213600-145221800 Weak transcription Brain Hippocampus Middle brain
43 chr1:145213800-145215400 Weak transcription Primary hematopoietic stem cells blood
44 chr1:145213800-145216400 Weak transcription Primary hematopoietic stem cells short term culture blood
45 chr1:145213800-145216800 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
46 chr1:145213800-145217000 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
47 chr1:145213800-145219200 Weak transcription ES-I3 Cell Line embryonic stem cell
48 chr1:145213800-145219200 Weak transcription HUES64 Cell Line embryonic stem cell
49 chr1:145213800-145219200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
50 chr1:145213800-145219200 Weak transcription Stomach Smooth Muscle stomach

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