Variant report

Variant	rs540258189
Chromosome Location	chr1:168804000-168804001
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:168803305..168804821-chr1:168806997..168808555,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869415	chr1:168467284-169153863	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
2	nsv831847	chr1:168669877-168850129	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv464250	chr1:168772393-168826032	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv548145	chr1:168772393-168826032	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv3364789	chr1:168803428-168805376	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:168799200-168804000	Enhancers	Fetal Intestine Small	intestine
2	chr1:168799200-168804000	Enhancers	Stomach Mucosa	stomach
3	chr1:168800200-168804000	Enhancers	Fetal Intestine Large	intestine
4	chr1:168801600-168804200	Enhancers	Rectal Mucosa Donor 31	rectum
5	chr1:168801800-168806000	Enhancers	Fetal Heart	heart
6	chr1:168802600-168804000	Enhancers	Primary T killer memory cells from peripheral blood	blood
7	chr1:168802600-168804000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr1:168802600-168804000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr1:168802800-168804000	Enhancers	Primary T helper naive cells from peripheral blood	blood
10	chr1:168802800-168804000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
11	chr1:168802800-168804000	Enhancers	Fetal Lung	lung
12	chr1:168802800-168805800	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr1:168803000-168804000	Enhancers	Ovary	ovary
14	chr1:168803000-168804000	Enhancers	A549	lung
15	chr1:168803200-168804000	Enhancers	Primary T cells from cord blood	blood
16	chr1:168803200-168804000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
17	chr1:168803200-168804000	Enhancers	Liver	Liver
18	chr1:168803200-168804000	Enhancers	Fetal Kidney	kidney
19	chr1:168803800-168804000	Enhancers	Rectal Mucosa Donor 29	rectum
20	chr1:168803800-168804800	Weak transcription	Small Intestine	intestine
21	chr1:168803800-168805000	Weak transcription	Right Atrium	heart
22	chr1:168803800-168805200	Weak transcription	Pancreas	Pancrea
23	chr1:168803800-168805800	Enhancers	HepG2	liver
24	chr1:168803800-168814600	Weak transcription	Left Ventricle	heart
25	chr1:168804000-168804400	Weak transcription	Fetal Intestine Large	intestine
26	chr1:168804000-168804600	Weak transcription	Fetal Intestine Small	intestine
27	chr1:168804000-168804600	Weak transcription	Rectal Mucosa Donor 29	rectum
28	chr1:168804000-168805000	Weak transcription	Fetal Kidney	kidney
29	chr1:168804000-168805000	Weak transcription	Fetal Lung	lung
30	chr1:168804000-168805400	Weak transcription	A549	lung
31	chr1:168804000-168808200	Weak transcription	Stomach Mucosa	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links