Variant report

Variant	rs540258660
Chromosome Location	chr4:20275492-20275493
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:20274898..20276936-chr4:20279121..20281549,2	MCF-7	breast:
2	chr4:20271116..20273425-chr4:20275227..20278137,2	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878736	chr4:20233035-20279858	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv878737	chr4:20233035-20282334	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv878738	chr4:20255306-20300192	Weak transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv878739	chr4:20255306-20307922	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv461287	chr4:20261786-20292239	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv593791	chr4:20261786-20292239	Genic enhancers Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv593792	chr4:20275477-20362716	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:20258200-20299400	Weak transcription	Fetal Stomach	stomach
2	chr4:20260000-20276200	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr4:20268600-20280000	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr4:20268800-20283200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr4:20269200-20284600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr4:20271000-20275600	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr4:20272800-20276000	Weak transcription	Colon Smooth Muscle	Colon
8	chr4:20273800-20275600	Weak transcription	NHDF-Ad	bronchial
9	chr4:20273800-20278000	Weak transcription	Rectal Smooth Muscle	rectum
10	chr4:20273800-20286600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr4:20274200-20278200	Weak transcription	NHLF	lung
12	chr4:20274400-20275600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr4:20274400-20282200	Weak transcription	Fetal Kidney	kidney
14	chr4:20274600-20277000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr4:20274600-20277000	Weak transcription	Osteobl	bone
16	chr4:20274600-20278200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr4:20274600-20278200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr4:20274600-20280800	Weak transcription	NHEK	skin
19	chr4:20274600-20285600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr4:20274600-20286800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr4:20274600-20288600	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr4:20274800-20279200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr4:20275000-20276600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr4:20275200-20275600	Enhancers	NH-A	brain
25	chr4:20275400-20275800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr4:20275400-20275800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr4:20275400-20275800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr4:20275400-20275800	Strong transcription	Fetal Lung	lung
29	chr4:20275400-20276400	Genic enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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