Variant report

Variant	rs540265629
Chromosome Location	chr5:117393913-117393914
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:117393514..117395795-chr9:96212246..96215185,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000188938	Chromatin interaction
ENSG00000048828	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:30 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027428	chr5:117072745-118036353	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv537877	chr5:117072745-118036353	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv1067621	chr5:117102544-118036352	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
4	nsv531292	chr5:117102544-118036352	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
5	nsv1021370	chr5:117217907-117479218	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv830460	chr5:117282763-117448057	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv1016903	chr5:117301623-117483934	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv4972	chr5:117365569-117410415	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	esv3504015	chr5:117385953-117395051	Inactive region	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv1021879	chr5:117386077-117570453	Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
11	nsv471787	chr5:117386132-117394133	Inactive region	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
12	esv3504012	chr5:117386378-117394901	Inactive region	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
13	nsv517540	chr5:117386434-117400779	Inactive region	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
14	esv3470661	chr5:117386553-117395051	Inactive region	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
15	esv2511358	chr5:117386767-117394852	Inactive region	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
16	esv2395478	chr5:117386920-117394062	Inactive region	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
17	esv3504014	chr5:117386946-117393989	Inactive region	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
18	esv3470659	chr5:117386955-117394012	Inactive region	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
19	esv3504013	chr5:117386970-117393988	Inactive region	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
20	esv3504009	chr5:117387002-117394110	Inactive region	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
21	esv3470660	chr5:117387007-117393982	Inactive region	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
22	esv3504010	chr5:117387041-117393934	Inactive region	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
23	esv11027	chr5:117387158-117395999	Inactive region	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
24	nsv969259	chr5:117387406-117395676	Inactive region	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
25	esv2763901	chr5:117388422-117404340	Inactive region	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
26	nsv599507	chr5:117390364-117393993	Inactive region	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
27	nsv599508	chr5:117390364-117394090	Inactive region	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
28	nsv818380	chr5:117390364-117400779	Inactive region	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
29	nsv599515	chr5:117390558-117393993	Inactive region	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
30	nsv599522	chr5:117391386-117393993	Inactive region	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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