Variant report

Variant	rs540266321
Chromosome Location	chr12:105879634-105879635
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:105878812..105881754-chr12:106532109..106533760,2	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899501	chr12:105819046-105950801	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv832507	chr12:105821685-106005186	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv899502	chr12:105862964-105904525	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	esv3325324	chr12:105878622-105883020	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:105863200-105884200	Weak transcription	Right Atrium	heart
2	chr12:105874400-105893600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr12:105875400-105904400	Weak transcription	Aorta	Aorta
4	chr12:105876400-105880400	Weak transcription	Fetal Kidney	kidney
5	chr12:105876400-105881800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr12:105878200-105880800	Enhancers	Left Ventricle	heart
7	chr12:105878400-105881600	Enhancers	HUVEC	blood vessel
8	chr12:105878600-105880200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr12:105878800-105879800	Enhancers	Spleen	Spleen
10	chr12:105878800-105879800	Enhancers	Hela-S3	cervix
11	chr12:105878800-105880000	Enhancers	Adipose Nuclei	Adipose
12	chr12:105878800-105880200	Enhancers	Placenta	Placenta
13	chr12:105878800-105880200	Enhancers	Skeletal Muscle Male	skeletal muscle
14	chr12:105878800-105880600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr12:105878800-105880800	Enhancers	HSMMtube	muscle
16	chr12:105879000-105879800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr12:105879000-105879800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr12:105879000-105879800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr12:105879000-105879800	Enhancers	HSMM	muscle
20	chr12:105879000-105880000	Enhancers	Osteobl	bone
21	chr12:105879200-105880400	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr12:105879200-105884200	Weak transcription	Psoas Muscle	Psoas
23	chr12:105879400-105888800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr12:105879600-105879800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
25	chr12:105879600-105879800	Weak transcription	Right Ventricle	heart
26	chr12:105879600-105879800	Enhancers	NHLF	lung
27	chr12:105879600-105880000	Enhancers	Fetal Muscle Leg	muscle
28	chr12:105879600-105880400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr12:105879600-105880600	Enhancers	NH-A	brain
30	chr12:105879600-105882000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr12:105879600-105885800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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