Variant report

Variant	rs540266955
Chromosome Location	chr14:65957229-65957230
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036403	chr14:65724229-66208114	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv1043943	chr14:65782466-66698411	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
3	nsv542120	chr14:65782466-66698411	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
4	nsv1039168	chr14:65811750-66308343	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
5	esv3366524	chr14:65924360-66423862	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
6	nsv456327	chr14:65955517-66052901	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv564951	chr14:65955517-66052901	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65931400-65966200	Weak transcription	Aorta	Aorta
2	chr14:65936600-65957400	Weak transcription	Primary B cells from cord blood	blood
3	chr14:65937400-65961600	Weak transcription	Fetal Intestine Large	intestine
4	chr14:65938400-65963400	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr14:65939000-65969400	Weak transcription	Dnd41	blood
6	chr14:65940600-65959400	Weak transcription	Primary hematopoietic stem cells	blood
7	chr14:65945200-65980000	Weak transcription	Primary T helper cells fromperipheralblood	blood
8	chr14:65945600-65959000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr14:65949600-65970200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr14:65950000-65965000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr14:65950000-65966000	Weak transcription	Psoas Muscle	Psoas
12	chr14:65950000-65969400	Weak transcription	NH-A	brain
13	chr14:65950000-65973400	Weak transcription	Gastric	stomach
14	chr14:65952200-65960000	Enhancers	Brain Substantia Nigra	brain
15	chr14:65952600-65963200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr14:65953600-65959800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr14:65953800-65970600	Weak transcription	Stomach Mucosa	stomach
18	chr14:65954800-65959400	Weak transcription	Left Ventricle	heart
19	chr14:65955000-65958200	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr14:65955200-65960600	Weak transcription	Brain Germinal Matrix	brain
21	chr14:65955400-65957600	Weak transcription	Fetal Brain Male	brain
22	chr14:65955400-65958200	Enhancers	Brain Hippocampus Middle	brain
23	chr14:65955400-65960000	Weak transcription	Primary T helper cells PMA-I stimulated	--
24	chr14:65955600-65957400	Weak transcription	Brain Anterior Caudate	brain
25	chr14:65955600-65958800	Weak transcription	Primary B cells from peripheral blood	blood
26	chr14:65955800-65957800	Weak transcription	Fetal Brain Female	brain
27	chr14:65956000-65957400	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr14:65956600-65963000	Weak transcription	Primary T cells from cord blood	blood
29	chr14:65956800-65957600	Enhancers	Small Intestine	intestine
30	chr14:65956800-65958000	Enhancers	Fetal Lung	lung
31	chr14:65956800-65958200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
32	chr14:65956800-65958400	Enhancers	Brain Cingulate Gyrus	brain
33	chr14:65956800-65958800	Enhancers	Brain Angular Gyrus	brain
34	chr14:65957000-65957400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
35	chr14:65957000-65958000	Enhancers	Pancreatic Islets	Pancreatic Islet
36	chr14:65957200-65957400	Enhancers	iPS-20b Cell Line	embryonic stem cell
37	chr14:65957200-65957400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
38	chr14:65957200-65958000	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr14:65957200-65959000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

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