Variant report

Variant	rs540276089
Chromosome Location	chr4:85886099-85886100
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:85879778..85882729-chr4:85884440..85887298,2	K562	blood:
2	chr4:85820113..85822349-chr4:85884941..85887197,2	MCF-7	breast:
3	chr4:85503339..85505737-chr4:85885750..85887907,3	MCF-7	breast:
4	chr4:85881229..85883388-chr4:85885235..85887298,2	K562	blood:
5	chr4:85790487..85793474-chr4:85885792..85887497,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000163624	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1829655	chr4:85577491-86292692	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv519588	chr4:85762385-86591202	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv879516	chr4:85877561-85895436	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	esv3359788	chr4:85885953-85888501	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:85865200-85886400	Weak transcription	Fetal Muscle Trunk	muscle
2	chr4:85866000-85886200	Weak transcription	Fetal Intestine Small	intestine
3	chr4:85872000-85886600	Weak transcription	Lung	lung
4	chr4:85873400-85886600	Weak transcription	Esophagus	oesophagus
5	chr4:85874600-85886200	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr4:85877400-85886200	Weak transcription	Rectal Smooth Muscle	rectum
7	chr4:85879600-85886200	Weak transcription	Fetal Lung	lung
8	chr4:85879800-85886200	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr4:85880000-85886200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr4:85880000-85886200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr4:85880000-85886200	Weak transcription	NH-A	brain
12	chr4:85880000-85886600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr4:85880000-85886600	Weak transcription	Spleen	Spleen
14	chr4:85881000-85886200	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr4:85881600-85886200	Weak transcription	Right Ventricle	heart
16	chr4:85884200-85886200	Weak transcription	Brain Substantia Nigra	brain
17	chr4:85884800-85886200	Enhancers	Liver	Liver
18	chr4:85885200-85886200	Enhancers	Fetal Brain Male	brain
19	chr4:85885200-85886200	Weak transcription	NHDF-Ad	bronchial
20	chr4:85885200-85886400	Enhancers	Breast Myoepithelial Primary Cells	Breast
21	chr4:85885200-85886400	Enhancers	Primary monocytes fromperipheralblood	blood
22	chr4:85885200-85886600	Bivalent/Poised TSS	Primary B cells from cord blood	blood
23	chr4:85885200-85886800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
24	chr4:85885400-85886200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr4:85885400-85886200	Enhancers	Cortex derived primary cultured neurospheres	brain
26	chr4:85885400-85886200	Enhancers	Brain Hippocampus Middle	brain
27	chr4:85885400-85886200	Enhancers	Fetal Muscle Leg	muscle
28	chr4:85885400-85886400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr4:85885400-85886400	Enhancers	Duodenum Mucosa	Duodenum
30	chr4:85885400-85886400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
31	chr4:85885400-85886400	Enhancers	Placenta	Placenta
32	chr4:85885400-85886400	Enhancers	Left Ventricle	heart
33	chr4:85885400-85886800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr4:85885400-85886800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr4:85885400-85888400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr4:85885400-85888400	Active TSS	Fetal Kidney	kidney
37	chr4:85885400-85889400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr4:85885600-85886200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr4:85885600-85886200	Enhancers	Right Atrium	heart
40	chr4:85885600-85886800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
41	chr4:85885800-85886200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr4:85885800-85886200	Active TSS	HUES48 Cell Line	embryonic stem cell
43	chr4:85885800-85886200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr4:85885800-85886200	Enhancers	Brain Cingulate Gyrus	brain
45	chr4:85885800-85886200	Weak transcription	Duodenum Smooth Muscle	Duodenum
46	chr4:85885800-85886200	Enhancers	Fetal Heart	heart
47	chr4:85885800-85886200	Enhancers	Rectal Mucosa Donor 29	rectum
48	chr4:85885800-85886200	Active TSS	Osteobl	bone
49	chr4:85885800-85886400	Enhancers	Colon Smooth Muscle	Colon
50	chr4:85885800-85886400	Enhancers	Rectal Mucosa Donor 31	rectum

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