Variant report

Variant	rs540282563
Chromosome Location	chr10:18840408-18840409
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550042	chr10:18683267-18994583	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	esv34545	chr10:18821185-18908294	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	esv1793653	chr10:18827828-18888369	Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	esv1794817	chr10:18827828-18888369	Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
5	esv1811259	chr10:18827828-18888369	ZNF genes & repeats Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
6	esv1840241	chr10:18827828-18888369	Enhancers Strong transcription ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
7	esv1841068	chr10:18827828-18888369	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
8	esv1851495	chr10:18827828-18888369	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
9	esv1835982	chr10:18833550-18872699	Genic enhancers Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	esv2757371	chr10:18835325-18906507	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
11	esv2759736	chr10:18835325-18906507	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
12	nsv511455	chr10:18837285-18854168	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers	TF binding region	2 gene(s)	inside rSNPs	diseases
13	nsv550043	chr10:18837285-18859153	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers	TF binding region	2 gene(s)	inside rSNPs	diseases
14	esv1814421	chr10:18839350-18862211	Weak transcription ZNF genes & repeats Strong transcription Enhancers	TF binding region	2 gene(s)	inside rSNPs	diseases
15	nsv466760	chr10:18839350-18905935	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
16	nsv550044	chr10:18839350-18905935	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18815200-18843600	Weak transcription	A549	lung
2	chr10:18816400-18841800	Strong transcription	Liver	Liver
3	chr10:18820800-18841600	Weak transcription	Hela-S3	cervix
4	chr10:18822000-18848000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr10:18822800-18841800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr10:18824200-18846200	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr10:18824200-18850600	Weak transcription	NHLF	lung
8	chr10:18825600-18841800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr10:18827200-18842000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr10:18827200-18845200	Weak transcription	NHEK	skin
11	chr10:18827400-18841600	Weak transcription	HMEC	breast
12	chr10:18828600-18841600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr10:18828600-18841600	Weak transcription	Primary neutrophils fromperipheralblood	blood
14	chr10:18828600-18841800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr10:18828600-18841800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr10:18828600-18841800	Weak transcription	Pancreas	Pancrea
17	chr10:18828600-18843000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr10:18828600-18843400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr10:18828600-18844400	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr10:18828600-18845400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr10:18828800-18846000	Weak transcription	Spleen	Spleen
22	chr10:18829000-18841800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr10:18829200-18851200	Weak transcription	Esophagus	oesophagus
24	chr10:18829800-18844000	Weak transcription	Brain Angular Gyrus	brain
25	chr10:18830000-18842000	Weak transcription	Fetal Brain Female	brain
26	chr10:18830000-18842400	Weak transcription	Brain Germinal Matrix	brain
27	chr10:18830200-18841400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr10:18830200-18841800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr10:18830200-18841800	Weak transcription	Aorta	Aorta
30	chr10:18830200-18851000	Weak transcription	Thymus	Thymus
31	chr10:18830400-18841600	Weak transcription	H9 Cell Line	embryonic stem cell
32	chr10:18830400-18841800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
33	chr10:18830400-18841800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr10:18830400-18841800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
35	chr10:18830400-18841800	Weak transcription	Brain Cingulate Gyrus	brain
36	chr10:18830400-18841800	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr10:18830400-18841800	Weak transcription	Brain Substantia Nigra	brain
38	chr10:18830400-18841800	Weak transcription	Stomach Smooth Muscle	stomach
39	chr10:18830400-18843000	Weak transcription	Rectal Smooth Muscle	rectum
40	chr10:18830400-18856600	Weak transcription	Skeletal Muscle Male	skeletal muscle
41	chr10:18830600-18841600	Weak transcription	Fetal Lung	lung
42	chr10:18830600-18841800	Weak transcription	Brain Hippocampus Middle	brain
43	chr10:18830600-18841800	Weak transcription	Placenta	Placenta
44	chr10:18830600-18841800	Weak transcription	Gastric	stomach
45	chr10:18830600-18842200	Weak transcription	Small Intestine	intestine
46	chr10:18830600-18845000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr10:18830600-18846600	Weak transcription	NH-A	brain
48	chr10:18831000-18841800	Weak transcription	Rectal Mucosa Donor 31	rectum
49	chr10:18831000-18846000	Weak transcription	Lung	lung
50	chr10:18831000-18850200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood

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