Variant report

Variant	rs540295099
Chromosome Location	chr11:46004903-46004904
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:46002933..46004911-chr11:46139730..46142231,2	K562	blood:
2	chr11:45942896..45944721-chr11:46003049..46005001,2	K562	blood:
3	chr11:46000949..46006706-chr11:46011674..46018213,17	K562	blood:
4	chr11:45869552..45871506-chr11:46003139..46005373,2	K562	blood:
5	chr11:45987934..45989618-chr11:46004381..46006271,2	K562	blood:
6	chr11:45990331..45993127-chr11:46002263..46005168,2	K562	blood:
7	chr11:45998746..46001549-chr11:46002921..46008009,7	K562	blood:
8	chr11:45997750..46001916-chr11:46003160..46008009,7	K562	blood:

No data

Variant related genes	Relation type
ENSG00000165905	Chromatin interaction
ENSG00000135365	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv523952	chr11:45983385-46028281	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
2	nsv972947	chr11:46004497-46007589	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45993000-46015000	Weak transcription	Psoas Muscle	Psoas
2	chr11:45993000-46017600	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr11:46000400-46013000	Weak transcription	Fetal Intestine Large	intestine
4	chr11:46000600-46010400	Weak transcription	Hela-S3	cervix
5	chr11:46000800-46006200	Enhancers	Fetal Heart	heart
6	chr11:46000800-46010200	Weak transcription	Liver	Liver
7	chr11:46000800-46012400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr11:46001000-46015400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr11:46001400-46013200	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr11:46001400-46013600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr11:46001400-46015200	Weak transcription	Pancreas	Pancrea
12	chr11:46001400-46016000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr11:46001400-46070400	Weak transcription	Primary hematopoietic stem cells	blood
14	chr11:46001600-46005000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr11:46001600-46006800	Weak transcription	Thymus	Thymus
16	chr11:46001600-46007200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr11:46001600-46015200	Weak transcription	Fetal Muscle Trunk	muscle
18	chr11:46001600-46015400	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr11:46001600-46016400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr11:46001600-46021000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr11:46002000-46015000	Weak transcription	Fetal Muscle Leg	muscle
22	chr11:46002000-46025000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr11:46002000-46042400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr11:46002000-46056200	Weak transcription	Primary T helper cells fromperipheralblood	blood
25	chr11:46002200-46005000	Weak transcription	Monocytes-CD14+_RO01746	blood
26	chr11:46002200-46024800	Weak transcription	Primary neutrophils fromperipheralblood	blood
27	chr11:46002200-46025000	Weak transcription	Primary monocytes fromperipheralblood	blood
28	chr11:46002400-46005200	Weak transcription	Primary T cells from cord blood	blood
29	chr11:46002600-46005800	Weak transcription	Primary B cells from cord blood	blood
30	chr11:46002600-46012000	Weak transcription	GM12878-XiMat	blood
31	chr11:46002600-46023200	Weak transcription	Primary B cells from peripheral blood	blood
32	chr11:46003000-46005000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr11:46003000-46005200	Enhancers	Brain Hippocampus Middle	brain
34	chr11:46003600-46005200	Enhancers	Brain Germinal Matrix	brain
35	chr11:46003600-46005400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
36	chr11:46003600-46005400	Enhancers	Brain Angular Gyrus	brain
37	chr11:46003600-46005400	Enhancers	Right Atrium	heart
38	chr11:46003600-46005600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
39	chr11:46003600-46006200	Enhancers	H1 Cell Line	embryonic stem cell
40	chr11:46003600-46006400	Enhancers	Fetal Brain Male	brain
41	chr11:46003600-46006800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr11:46003800-46005200	Enhancers	Duodenum Smooth Muscle	Duodenum
43	chr11:46003800-46006200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr11:46003800-46006400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr11:46004000-46005200	Enhancers	Adipose Nuclei	Adipose
46	chr11:46004000-46005400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr11:46004000-46005800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr11:46004000-46006200	Enhancers	Brain Substantia Nigra	brain
49	chr11:46004000-46007000	Enhancers	iPS-15b Cell Line	embryonic stem cell
50	chr11:46004000-46007600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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