Variant report

Variant	rs540322112
Chromosome Location	chr15:82339951-82339952
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	HDAC2	chr15:82338401-82339953	MCF-7	breast:	n/a	chr15:82339152-82339171
2	E2F6	chr15:82339235-82340358	H1-hESC	embryonic stem cell:	n/a	chr15:82339365-82339374 chr15:82340172-82340179 chr15:82339707-82339722 chr15:82339325-82339334
3	MYC	chr15:82339123-82340357	H1-hESC	embryonic stem cell:	n/a	n/a
4	REST	chr15:82336177-82340582	H1-neurons	neurons:	n/a	chr15:82339772-82339792 chr15:82337695-82337715 chr15:82337027-82337040 chr15:82338539-82338549
5	MYC	chr15:82337512-82340145	K562	blood:	n/a	chr15:82338617-82338627 chr15:82338600-82338610
6	REST	chr15:82339751-82340637	ECC-1	luminal epithelium:	n/a	chr15:82339772-82339792
7	SIN3AK20	chr15:82336778-82340508	MCF-7	breast:	n/a	n/a
8	CTCF	chr15:82338428-82340528	SK-N-SH	brain:	n/a	chr15:82339617-82339630 chr15:82339616-82339632 chr15:82339359-82339372 chr15:82339356-82339369
9	MYC	chr15:82338173-82340098	K562	blood:	n/a	chr15:82338617-82338627 chr15:82338600-82338610
10	SP4	chr15:82339455-82340091	H1-hESC	embryonic stem cell:	n/a	n/a
11	POLR2A	chr15:82338092-82340369	H1-hESC	embryonic stem cell:	n/a	n/a
12	USF2	chr15:82339344-82339964	H1-hESC	embryonic stem cell:	n/a	chr15:82339681-82339697 chr15:82339357-82339373
13	PML	chr15:82338134-82340069	MCF-7	breast:	n/a	n/a
14	MAX	chr15:82339367-82340222	ECC-1	luminal epithelium:	n/a	n/a
15	MAX	chr15:82338231-82340110	SK-N-SH	brain:	n/a	chr15:82338617-82338627 chr15:82338600-82338610
16	REST	chr15:82339899-82340511	MCF-7	breast:	n/a	n/a
17	MYC	chr15:82338461-82340282	A549	lung:	n/a	chr15:82338617-82338627 chr15:82338600-82338610
18	BHLHE40	chr15:82337416-82340017	K562	blood:	n/a	chr15:82338216-82338232 chr15:82339221-82339237 chr15:82339681-82339697 chr15:82339357-82339373 chr15:82338533-82338549
19	GATA2	chr15:82339265-82340071	SH-SY5Y	brain:	n/a	n/a
20	REST	chr15:82339872-82340620	H1-hESC	embryonic stem cell:	n/a	n/a
21	BACH1	chr15:82338451-82340568	H1-hESC	embryonic stem cell:	n/a	n/a
22	E2F6	chr15:82338454-82340383	A549	lung:	n/a	chr15:82339365-82339374 chr15:82338606-82338618 chr15:82338836-82338853 chr15:82340172-82340179 chr15:82339707-82339722 chr15:82338836-82338853 chr15:82339325-82339334
23	MAX	chr15:82339747-82340197	ECC-1	luminal epithelium:	n/a	n/a
24	POLR2A	chr15:82337651-82340028	A549	lung:	n/a	n/a
25	ZNF263	chr15:82336412-82340636	HEK293-T-REx	kidney:	n/a	chr15:82337454-82337463 chr15:82338611-82338620 chr15:82337451-82337460 chr15:82337447-82337468 chr15:82337461-82337470 chr15:82337428-82337437 chr15:82340367-82340376 chr15:82339665-82339674
26	SIN3A	chr15:82335328-82340684	H1-hESC	embryonic stem cell:	n/a	chr15:82339224-82339235 chr15:82339725-82339736 chr15:82337260-82337271 chr15:82337592-82337605 chr15:82339681-82339694 chr15:82337106-82337119 chr15:82340224-82340233 chr15:82337030-82337043 chr15:82339354-82339363 chr15:82339845-82339856
27	MXI1	chr15:82334810-82340509	SK-N-SH	brain:	n/a	n/a
28	MYC	chr15:82338954-82340017	MCF-7	breast:	n/a	n/a
29	E2F6	chr15:82339399-82340476	H1-hESC	embryonic stem cell:	n/a	chr15:82340172-82340179 chr15:82339707-82339722
30	CTCF	chr15:82339251-82340002	K562	blood:	n/a	chr15:82339617-82339630 chr15:82339616-82339632 chr15:82339359-82339372 chr15:82339356-82339369
31	HMGN3	chr15:82336554-82340095	K562	blood:	n/a	n/a
32	POLR2A	chr15:82339507-82340020	H1-hESC	embryonic stem cell:	n/a	n/a
33	POLR2A	chr15:82337921-82340010	HEK293	kidney:	n/a	n/a
34	MAX	chr15:82336692-82340395	A549	lung:	n/a	chr15:82338617-82338627 chr15:82338600-82338610
35	MXI1	chr15:82339176-82340349	H1-hESC	embryonic stem cell:	n/a	n/a
36	JUND	chr15:82339424-82340554	H1-hESC	embryonic stem cell:	n/a	chr15:82340254-82340263
37	POLR2A	chr15:82339462-82340052	SK-N-MC	brain:	n/a	n/a
38	POLR2A	chr15:82336372-82340687	H1-hESC	embryonic stem cell:	n/a	n/a
39	CREB1	chr15:82339389-82340096	H1-hESC	embryonic stem cell:	n/a	n/a
40	YY1	chr15:82339453-82340062	H1-hESC	embryonic stem cell:	n/a	chr15:82339725-82339734 chr15:82339529-82339540
41	RAD21	chr15:82339205-82340050	H1-hESC	embryonic stem cell:	n/a	chr15:82339358-82339372 chr15:82339356-82339370 chr15:82339357-82339370 chr15:82339359-82339371
42	MAX	chr15:82339838-82340025	K562	blood:	n/a	n/a
43	MAX	chr15:82337482-82340151	K562	blood:	n/a	chr15:82338617-82338627 chr15:82338600-82338610
44	CTBP2	chr15:82336776-82340285	H1-hESC	embryonic stem cell:	n/a	n/a
45	REST	chr15:82339907-82340533	PFSK-1	brain:	n/a	n/a
46	CTCF	chr15:82339900-82340050	GM12864	blood:	n/a	n/a
47	HA-E2F1	chr15:82338585-82340472	MCF-7	breast:	n/a	chr15:82339365-82339374 chr15:82338606-82338618 chr15:82338836-82338853 chr15:82340172-82340179 chr15:82339707-82339722 chr15:82338836-82338853 chr15:82339325-82339334
48	POLR2A	chr15:82337597-82340053	MCF-7	breast:	n/a	n/a
49	POLR2A	chr15:82337835-82340397	HUVEC	blood vessel:	n/a	n/a
50	POLR2A	chr15:82338108-82340701	HUVEC	blood vessel:	n/a	n/a

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr15:82339920-82339970	HepG2	liver:	n/a
2	chr15:82339920-82339970	AG09309	skin:	n/a
3	chr15:82339920-82339970	BJ	skin:	n/a
4	chr15:82339920-82339970	NB4	blood:	n/a
5	chr15:82339920-82339970	ECC-1	luminal epithelium:	n/a
6	chr15:82339920-82339970	AG09319	gingival:	n/a
7	chr15:82339920-82339970	K562	blood:	n/a
8	chr15:82339920-82339970	MCF-7	breast:	n/a
9	chr15:82339920-82339970	Hepatocyte	liver:	n/a
10	chr15:82339920-82339970	H1-hESC	embryonic stem cell:	embryo
11	chr15:82339920-82339970	Jurkat	blood:	n/a
12	chr15:82339920-82339970	SK-N-SH_RA	brain:	n/a
13	chr15:82339920-82339970	NHBE	bronchial:	n/a
14	chr15:82339920-82339970	HIPEpiC	eye:	n/a
15	chr15:82339920-82339970	HRCEpiC	kidney:	n/a
16	chr15:82339920-82339970	NH-A	brain:	n/a
17	chr15:82339920-82339970	Hela-S3	cervix:	n/a
18	chr15:82339920-82339970	BE2_C	brain:	n/a
19	chr15:82339920-82339970	HAEpiC	amniotic membrane:	n/a
20	chr15:82339920-82339970	ProgFib	skin:	n/a
21	chr15:82339920-82339970	GM19239	blood:	n/a
22	chr15:82339920-82339970	ovcar-3	ovarian:	n/a
23	chr15:82339920-82339970	RPTEC	kidney:	n/a
24	chr15:82339920-82339970	AG04450	lung:	fetal
25	chr15:82339920-82339970	GM12892	blood:	n/a
26	chr15:82339920-82339970	PFSK-1	brain:	n/a
27	chr15:82339920-82339970	U87	brain:	n/a
28	chr15:82339920-82339970	HCF	heart:	n/a
29	chr15:82339920-82339970	IMR90	lung:	fetal
30	chr15:82339920-82339970	GM12878	blood:	n/a
31	chr15:82339920-82339970	AG10803	skin:	n/a
32	chr15:82339920-82339970	Caco-2	colon:	n/a
33	chr15:82339920-82339970	NT2-D1	testis:	n/a
34	chr15:82339920-82339970	HEEpiC	esophagus:	n/a
35	chr15:82339920-82339970	SAEC	small airway:	n/a
36	chr15:82339920-82339970	PrEC	prostate:	n/a
37	chr15:82339920-82339970	HMEC	breast:	n/a
38	chr15:82339920-82339970	LNCaP	prostate:	n/a
39	chr15:82339920-82339970	HEK293	kidney:	embryo
40	chr15:82339920-82339970	T-47D	breast:	n/a
41	chr15:82339920-82339970	HL-60	blood:	n/a
42	chr15:82339920-82339970	NHDF-neo	bronchial:	n/a
43	chr15:82339920-82339970	HNPCEpiC	eye:	n/a
44	chr15:82339920-82339970	HUVEC	blood vessel:	n/a
45	chr15:82339920-82339970	SK-N-SH	brain:	n/a
46	chr15:82339920-82339970	HCPEpiC	choroid plexus:	n/a
47	chr15:82339920-82339970	GM06990	blood:	n/a
48	chr15:82339920-82339970	MCF10A-Er-Src	breast:	n/a
49	chr15:82339920-82339970	AoSMC	blood vessel:	n/a
50	chr15:82339920-82339970	PANC-1	pancreas:	n/a

No.	Distal block	Cell Line	Cell type
1	chr15:82105277..82106187-chr15:82339200..82340118,4	MCF-7	breast:
2	chr15:82019963..82021794-chr15:82338805..82341012,2	K562	blood:
3	chr15:82161807..82163789-chr15:82338428..82340595,2	K562	blood:
4	chr15:81772616..81773466-chr15:82339216..82340113,4	K562	blood:
5	chr15:82313172..82315891-chr15:82338607..82340341,2	MCF-7	breast:
6	chr15:82338618..82340658-chr15:82358570..82360235,2	MCF-7	breast:
7	chr15:82194966..82197509-chr15:82338812..82340977,2	K562	blood:
8	chr15:82338516..82340987-chr15:82386144..82387942,2	MCF-7	breast:
9	chr11:64877977..64880621-chr15:82337934..82340842,2	MCF-7	breast:
10	chr15:82303791..82305649-chr15:82338630..82341531,2	MCF-7	breast:

Variant related genes	Relation type
MEX3B	TF binding region
MEX3B	CpG island
ENSG00000259692	Chromatin interaction
ENSG00000254501	Chromatin interaction
ENSG00000149809	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833067	chr15:82234980-82450485	Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	esv2422504	chr15:82293064-82426400	Strong transcription Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv827415	chr15:82333348-82340769	Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Genic enhancers Weak transcription Strong transcription Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases
4	esv3344827	chr15:82334647-82340995	Bivalent Enhancer Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
5	esv3440467	chr15:82337922-82340770	Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
6	esv3396541	chr15:82338522-82341070	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Weak transcription Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:82335000-82340600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
2	chr15:82335400-82340400	Active TSS	HSMMtube	muscle
3	chr15:82335400-82340600	Active TSS	Brain Inferior Temporal Lobe	brain
4	chr15:82335400-82341200	Active TSS	Fetal Kidney	kidney
5	chr15:82335600-82340600	Active TSS	H9 Cell Line	embryonic stem cell
6	chr15:82335800-82340400	Active TSS	Colon Smooth Muscle	Colon
7	chr15:82336200-82340000	Active TSS	ES-I3 Cell Line	embryonic stem cell
8	chr15:82336200-82340200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr15:82336200-82340200	Active TSS	NHLF	lung
10	chr15:82336200-82340400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr15:82336200-82340400	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr15:82336200-82340400	Active TSS	HSMM	muscle
13	chr15:82336400-82340000	Active TSS	NHDF-Ad	bronchial
14	chr15:82336400-82340400	Active TSS	Pancreatic Islets	Pancreatic Islet
15	chr15:82336400-82340400	Active TSS	Ovary	ovary
16	chr15:82336600-82340000	Active TSS	iPS-18 Cell Line	embryonic stem cell
17	chr15:82336600-82340000	Active TSS	Muscle Satellite Cultured Cells	--
18	chr15:82336600-82340200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
19	chr15:82336600-82340200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr15:82336600-82340200	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr15:82336600-82340200	Active TSS	Aorta	Aorta
22	chr15:82336600-82340200	Active TSS	Rectal Smooth Muscle	rectum
23	chr15:82336600-82340400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr15:82336600-82340400	Active TSS	Psoas Muscle	Psoas
25	chr15:82336600-82340400	Active TSS	A549	lung
26	chr15:82336800-82340000	Active TSS	HUES64 Cell Line	embryonic stem cell
27	chr15:82336800-82340000	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
28	chr15:82336800-82340000	Active TSS	Brain Substantia Nigra	brain
29	chr15:82336800-82340000	Active TSS	Fetal Muscle Trunk	muscle
30	chr15:82336800-82340200	Active TSS	HUES48 Cell Line	embryonic stem cell
31	chr15:82336800-82340200	Active TSS	Brain Angular Gyrus	brain
32	chr15:82336800-82340200	Active TSS	Fetal Lung	lung
33	chr15:82336800-82340200	Active TSS	Right Atrium	heart
34	chr15:82336800-82340200	Active TSS	Thymus	Thymus
35	chr15:82336800-82340400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr15:82336800-82340400	Active TSS	Breast Myoepithelial Primary Cells	Breast
37	chr15:82336800-82340400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr15:82336800-82340600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr15:82336800-82340600	Active TSS	NH-A	brain
40	chr15:82337000-82340000	Active TSS	HUES6 Cell Line	embryonic stem cell
41	chr15:82337000-82340000	Active TSS	iPS-15b Cell Line	embryonic stem cell
42	chr15:82337000-82340000	Active TSS	Right Ventricle	heart
43	chr15:82337000-82340200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr15:82337000-82340200	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr15:82337000-82340400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr15:82337000-82340400	Active TSS	Left Ventricle	heart
47	chr15:82337000-82340600	Active TSS	Brain Anterior Caudate	brain
48	chr15:82337200-82340000	Active TSS	H1 Cell Line	embryonic stem cell
49	chr15:82337200-82340000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr15:82337200-82340000	Active TSS	Fetal Stomach	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links