Variant report

Variant	rs540322663
Chromosome Location	chr3:111282012-111282013
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460821	chr3:110637471-111501097	Enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv591275	chr3:110637471-111501097	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv997756	chr3:111226058-111376585	Active TSS Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv3946	chr3:111236035-111283038	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
5	nsv433354	chr3:111281864-111284561	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111269800-111289200	Weak transcription	Thymus	Thymus
2	chr3:111271600-111286000	Weak transcription	Primary B cells from peripheral blood	blood
3	chr3:111271600-111286200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr3:111271600-111286600	Weak transcription	Fetal Thymus	thymus
5	chr3:111275000-111283800	Weak transcription	Dnd41	blood
6	chr3:111281000-111282200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
7	chr3:111281000-111282400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
8	chr3:111281000-111282400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
9	chr3:111281000-111282800	Enhancers	Primary T helper cells fromperipheralblood	blood
10	chr3:111281400-111282400	Enhancers	Primary T helper naive cells from peripheral blood	blood
11	chr3:111281400-111282400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
12	chr3:111281400-111285800	Enhancers	Primary T helper cells PMA-I stimulated	--
13	chr3:111281600-111282200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
14	chr3:111281600-111282200	Enhancers	Primary T killer memory cells from peripheral blood	blood
15	chr3:111281600-111282600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr3:111281800-111282200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr3:111281800-111282200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr3:111281800-111282400	Genic enhancers	Primary T cells from cord blood	blood
19	chr3:111281800-111283600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr3:111282000-111286200	Weak transcription	Primary T cells fromperipheralblood	blood
21	chr3:111282000-111286400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links