Variant report

Variant	rs540328
Chromosome Location	chr6:128002602-128002603
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10457503	0.83[ASN][1000 genomes]
rs12206811	0.93[ASN][1000 genomes]
rs1448051	0.96[ASN][1000 genomes]
rs1550944	0.95[ASN][1000 genomes]
rs17054975	0.91[ASN][1000 genomes]
rs2786230	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3009959	0.93[ASN][1000 genomes]
rs35182011	0.91[ASN][1000 genomes]
rs471565	0.96[ASN][1000 genomes]
rs476132	0.96[ASN][1000 genomes]
rs476366	0.91[ASN][1000 genomes]
rs494043	1.00[ASN][1000 genomes]
rs495063	1.00[ASN][1000 genomes]
rs498692	0.96[ASN][1000 genomes]
rs505827	0.81[EUR][1000 genomes]
rs513605	1.00[ASN][1000 genomes]
rs513716	1.00[ASN][1000 genomes]
rs525267	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs527206	0.91[ASN][1000 genomes]
rs528725	0.96[ASN][1000 genomes]
rs540252	1.00[ASN][1000 genomes]
rs543982	1.00[ASN][1000 genomes]
rs546732	0.96[ASN][1000 genomes]
rs553910	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs557258	0.96[ASN][1000 genomes]
rs559832	0.98[ASN][1000 genomes]
rs566051	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs568675	0.93[ASN][1000 genomes]
rs570462	0.93[ASN][1000 genomes]
rs57595174	0.94[ASN][1000 genomes]
rs579512	0.96[ASN][1000 genomes]
rs580388	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs583072	0.81[EUR][1000 genomes]
rs583956	0.81[EUR][1000 genomes]
rs586500	0.96[ASN][1000 genomes]
rs601132	1.00[ASN][1000 genomes]
rs607496	0.82[EUR][1000 genomes]
rs613936	1.00[ASN][1000 genomes]
rs614885	0.81[EUR][1000 genomes]
rs620250	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs629648	0.96[ASN][1000 genomes]
rs641326	0.96[ASN][1000 genomes]
rs643912	0.96[ASN][1000 genomes]
rs648151	0.81[EUR][1000 genomes]
rs655681	0.81[EUR][1000 genomes]
rs658570	0.95[ASN][1000 genomes]
rs658838	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs661254	0.83[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs668527	0.96[ASN][1000 genomes]
rs675531	0.82[ASN][1000 genomes]
rs677431	1.00[ASN][1000 genomes]
rs680461	1.00[ASN][1000 genomes]
rs680544	0.82[EUR][1000 genomes]
rs682312	0.82[EUR][1000 genomes]
rs6918575	0.91[ASN][1000 genomes]
rs722916	0.94[ASN][1000 genomes]
rs72968949	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886638	chr6:127954614-128087172	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv886639	chr6:127954614-128109244	Strong transcription Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv886640	chr6:127961263-128096587	Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv886641	chr6:127971136-128085283	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv886642	chr6:127971136-128096587	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv886643	chr6:127971136-128109244	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv886644	chr6:127976408-128109244	Weak transcription Genic enhancers Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv886645	chr6:127977160-128085283	Strong transcription Enhancers Weak transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
9	nsv886646	chr6:127977160-128087172	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
10	nsv886647	chr6:127977160-128109244	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
11	nsv886648	chr6:127983009-128109244	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:128001000-128023800	Weak transcription	Thymus	Thymus

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