Variant report

Variant	rs540328016
Chromosome Location	chr12:40498856-40498857
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:39835235..39837376-chr12:40497652..40499874,2	K562	blood:
2	chr12:40494859..40496427-chr12:40496570..40499467,2	MCF-7	breast:
3	chr11:62607295..62609623-chr12:40497021..40499693,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000133316	Chromatin interaction
ENSG00000139116	Chromatin interaction
ENSG00000252974	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:28 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv558596	chr12:40413698-40591117	Active TSS Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv899028	chr12:40478652-40524180	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
3	nsv899029	chr12:40478652-40536061	Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	esv1816874	chr12:40492814-40499934	Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	n/a
5	esv1822895	chr12:40492814-40499934	Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	n/a
6	esv1838004	chr12:40492814-40499934	Flanking Active TSS Bivalent/Poised TSS Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	n/a
7	esv1841992	chr12:40492814-40499934	Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	n/a
8	esv1850635	chr12:40492814-40499934	Enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	n/a
9	esv1836585	chr12:40492814-40540939	Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
10	esv1839483	chr12:40492814-40540939	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
11	esv1839896	chr12:40493591-40499908	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	n/a
12	esv1834762	chr12:40496733-40499934	Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	n/a
13	esv1799112	chr12:40497095-40499908	Active TSS Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	n/a
14	esv1840625	chr12:40497095-40499908	Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	n/a
15	esv3359383	chr12:40498110-40500658	Flanking Active TSS Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	n/a
16	esv1841522	chr12:40498190-40499803	Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	n/a
17	esv1822852	chr12:40498190-40499934	Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	n/a
18	esv1844742	chr12:40498190-40499934	Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	n/a
19	esv1847923	chr12:40498190-40499934	Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	n/a
20	esv1835713	chr12:40498326-40499803	Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	n/a
21	esv1836654	chr12:40498326-40499908	Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	n/a
22	esv1839194	chr12:40498326-40499908	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	n/a
23	esv1845368	chr12:40498326-40499908	Active TSS Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	n/a
24	esv3436452	chr12:40498510-40501058	Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	n/a
25	esv1836520	chr12:40498683-40499934	Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	n/a
26	esv1837349	chr12:40498683-40499934	Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	n/a
27	esv1838337	chr12:40498683-40499934	Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	n/a
28	esv1846566	chr12:40498683-40527395	Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:40496800-40499000	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
2	chr12:40496800-40500400	Active TSS	Stomach Smooth Muscle	stomach
3	chr12:40496800-40501600	Active TSS	Brain Cingulate Gyrus	brain
4	chr12:40496800-40501600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
5	chr12:40496800-40501600	Active TSS	Pancreatic Islets	Pancreatic Islet
6	chr12:40497000-40499000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr12:40497000-40500200	Active TSS	Brain Angular Gyrus	brain
8	chr12:40497000-40501600	Active TSS	Brain Inferior Temporal Lobe	brain
9	chr12:40497000-40501600	Active TSS	Fetal Kidney	kidney
10	chr12:40497200-40499000	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
11	chr12:40497200-40502200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr12:40497400-40499000	Flanking Active TSS	Fetal Intestine Small	intestine
13	chr12:40497400-40500000	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr12:40497400-40501600	Active TSS	Right Atrium	heart
15	chr12:40497600-40499000	Flanking Active TSS	Duodenum Mucosa	Duodenum
16	chr12:40497600-40500400	Active TSS	Fetal Brain Female	brain
17	chr12:40497800-40499000	Enhancers	Spleen	Spleen
18	chr12:40497800-40499200	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr12:40497800-40500200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr12:40497800-40500400	Active TSS	Brain Hippocampus Middle	brain
21	chr12:40497800-40500600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
22	chr12:40497800-40501400	Active TSS	Brain Substantia Nigra	brain
23	chr12:40497800-40501400	Active TSS	Sigmoid Colon	Sigmoid Colon
24	chr12:40498000-40499000	Flanking Active TSS	Osteobl	bone
25	chr12:40498000-40499200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
26	chr12:40498000-40499600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
27	chr12:40498000-40500000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr12:40498000-40500200	Active TSS	H9 Cell Line	embryonic stem cell
29	chr12:40498000-40500400	Active TSS	Colon Smooth Muscle	Colon
30	chr12:40498000-40500800	Active TSS	Rectal Smooth Muscle	rectum
31	chr12:40498000-40501600	Active TSS	Ovary	ovary
32	chr12:40498200-40499000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
33	chr12:40498200-40499000	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
34	chr12:40498200-40500000	Active TSS	Fetal Intestine Large	intestine
35	chr12:40498200-40500200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr12:40498200-40500200	Active TSS	A549	lung
37	chr12:40498200-40501800	Active TSS	Duodenum Smooth Muscle	Duodenum
38	chr12:40498200-40501800	Active TSS	NHLF	lung
39	chr12:40498400-40499000	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
40	chr12:40498400-40499000	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
41	chr12:40498400-40499000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
42	chr12:40498400-40499000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr12:40498400-40499000	Flanking Active TSS	HUVEC	blood vessel
44	chr12:40498400-40499000	Flanking Active TSS	NHEK	skin
45	chr12:40498400-40499200	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
46	chr12:40498400-40499200	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
47	chr12:40498400-40499200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
48	chr12:40498400-40499200	Flanking Active TSS	Primary B cells from cord blood	blood
49	chr12:40498400-40499200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
50	chr12:40498400-40499200	Flanking Active TSS	Adipose Nuclei	Adipose

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