Variant report

Variant	rs540334431
Chromosome Location	chr6:147759551-147759552
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886759	chr6:147686274-147764267	Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv1019354	chr6:147739448-147774642	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv538468	chr6:147739448-147774642	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv525703	chr6:147759534-147767235	Bivalent Enhancer Bivalent/Poised TSS Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147755800-147763400	Weak transcription	Ovary	ovary
2	chr6:147757400-147762800	Weak transcription	Fetal Stomach	stomach
3	chr6:147758600-147760000	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
4	chr6:147758800-147761200	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
5	chr6:147759000-147759800	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
6	chr6:147759000-147760000	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
7	chr6:147759000-147760000	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
8	chr6:147759400-147759800	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr6:147759400-147760000	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
10	chr6:147759400-147760000	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr6:147759400-147760600	Enhancers	ES-WA7 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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