Variant report

Variant	rs540343399
Chromosome Location	chr12:33391028-33391029
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:33389850..33391877-chr17:56707852..56709552,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000212195	Chromatin interaction

Extended variants
information (count: 65 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:65 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530421	chr12:32825335-33465991	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv1037459	chr12:33310703-33905662	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv541459	chr12:33310703-33905662	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
4	esv3445417	chr12:33358734-33401031	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv669	chr12:33362795-33418800	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv832368	chr12:33368962-33588498	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	esv3424653	chr12:33369734-33401031	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv1048521	chr12:33373737-33430095	ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv508669	chr12:33378867-33403526	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	esv997389	chr12:33379599-33395418	Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	esv3584653	chr12:33379599-33395418	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	nsv442644	chr12:33379599-33395418	Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	nsv820749	chr12:33379907-33395477	Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
14	nsv826316	chr12:33379907-33395477	Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
15	nsv558220	chr12:33379925-33395357	Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
16	esv2468064	chr12:33380030-33395123	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
17	nsv826317	chr12:33380271-33446428	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
18	esv17955	chr12:33380281-33395477	Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
19	esv1004681	chr12:33381204-33400363	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
20	nsv512264	chr12:33383560-33398743	Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
21	nsv436139	chr12:33383720-33398489	Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
22	esv3480741	chr12:33384285-33397383	Inactive region	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
23	esv3495586	chr12:33384885-33396733	Inactive region	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
24	esv3495587	chr12:33384885-33396733	Inactive region	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
25	esv3495940	chr12:33384970-33398411	Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
26	esv3416769	chr12:33385001-33398450	Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
27	esv6597	chr12:33385021-33398499	Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
28	esv2405881	chr12:33385028-33398466	Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
29	esv3495929	chr12:33385029-33398377	Inactive region	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
30	esv3495952	chr12:33385029-33398377	Inactive region	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
31	nsv498787	chr12:33385104-33398360	Inactive region	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
32	esv3480730	chr12:33385510-33397058	Inactive region	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
33	esv3480752	chr12:33385510-33397058	Inactive region	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
34	esv3362641	chr12:33385735-33399333	Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
35	esv2421424	chr12:33385830-33395418	Inactive region	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
36	esv3373305	chr12:33385885-33396583	Inactive region	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
37	nsv826318	chr12:33386450-33393189	Inactive region	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
38	nsv514666	chr12:33386649-33392617	Inactive region	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
39	nsv558221	chr12:33386912-33391319	Inactive region	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
40	nsv558222	chr12:33386912-33392010	Inactive region	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
41	nsv558223	chr12:33386912-33392420	Inactive region	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
42	nsv558224	chr12:33386912-33392477	Inactive region	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
43	nsv558225	chr12:33386912-33393024	Inactive region	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
44	nsv558226	chr12:33386912-33393709	Inactive region	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
45	nsv558227	chr12:33386912-33394045	Inactive region	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
46	nsv558228	chr12:33386912-33394542	Inactive region	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
47	nsv558229	chr12:33386912-33394951	Inactive region	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
48	nsv558230	chr12:33386912-33395357	Inactive region	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
49	nsv975648	chr12:33387092-33391407	Inactive region	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
50	nsv558231	chr12:33387308-33392010	Inactive region	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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