Variant report

Variant	rs540376742
Chromosome Location	chr1:197750590-197750591
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:197743225..197745756-chr1:197745981..197751358,8	MCF-7	breast:

Variant related genes	Relation type
ENSG00000213047	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427908	chr1:197611569-197767362	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv947369	chr1:197750549-197778118	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:197744600-197751200	Weak transcription	Small Intestine	intestine
2	chr1:197745200-197752800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr1:197745200-197756800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr1:197745400-197751200	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr1:197745400-197752000	Weak transcription	Esophagus	oesophagus
6	chr1:197745600-197751000	Weak transcription	NHLF	lung
7	chr1:197745800-197751000	Weak transcription	Stomach Mucosa	stomach
8	chr1:197745800-197751400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr1:197746000-197751000	Weak transcription	Fetal Intestine Large	intestine
10	chr1:197746000-197751200	Weak transcription	Fetal Intestine Small	intestine
11	chr1:197746000-197751200	Weak transcription	Hela-S3	cervix
12	chr1:197746200-197750600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr1:197746200-197750600	Weak transcription	NHEK	skin
14	chr1:197746200-197751000	Weak transcription	NHDF-Ad	bronchial
15	chr1:197746200-197751000	Weak transcription	Osteobl	bone
16	chr1:197746200-197751200	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr1:197746200-197751200	Weak transcription	HMEC	breast
18	chr1:197746400-197751000	Weak transcription	Colonic Mucosa	Colon
19	chr1:197746400-197751200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr1:197746600-197751200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr1:197747800-197751200	Weak transcription	Primary hematopoietic stem cells	blood
22	chr1:197748200-197750600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr1:197748200-197750600	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr1:197748200-197750600	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr1:197748200-197750800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr1:197748200-197751200	Weak transcription	Primary monocytes fromperipheralblood	blood
27	chr1:197748200-197751200	Weak transcription	Duodenum Mucosa	Duodenum
28	chr1:197748200-197751800	Weak transcription	GM12878-XiMat	blood
29	chr1:197748400-197751200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
30	chr1:197748400-197751600	Weak transcription	Monocytes-CD14+_RO01746	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links