Variant report

Variant	rs540378130
Chromosome Location	chr14:68675154-68675155
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:68673468..68675267-chr14:68712695..68715486,2	MCF-7	breast:
2	chr14:68661189..68664435-chr14:68673006..68675908,3	MCF-7	breast:
3	chr14:68674867..68676643-chr14:68676816..68678381,2	MCF-7	breast:
4	chr14:68670172..68671900-chr14:68673341..68675204,2	MCF-7	breast:
5	chr14:68604554..68607336-chr14:68675149..68677760,3	MCF-7	breast:
6	chr14:68674848..68680641-chr14:69259721..69263504,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv428628	chr14:68674504-68835127	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68647000-68676600	Weak transcription	Primary B cells from cord blood	blood
2	chr14:68649400-68677000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr14:68666600-68675200	Weak transcription	Thymus	Thymus
4	chr14:68667000-68675600	Weak transcription	Stomach Mucosa	stomach
5	chr14:68672800-68676800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
6	chr14:68674000-68677000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr14:68674000-68677200	Enhancers	Osteobl	bone
8	chr14:68674000-68679200	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr14:68674200-68675600	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr14:68674200-68677000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr14:68674200-68677000	Enhancers	NHDF-Ad	bronchial
12	chr14:68674200-68677200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr14:68674400-68677000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr14:68674400-68677000	Enhancers	Muscle Satellite Cultured Cells	--
15	chr14:68674600-68675200	Weak transcription	Aorta	Aorta
16	chr14:68674600-68675400	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr14:68674600-68675400	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr14:68674600-68676200	Enhancers	Colon Smooth Muscle	Colon
19	chr14:68674800-68675200	Enhancers	Adipose Nuclei	Adipose
20	chr14:68674800-68675400	Enhancers	HUES48 Cell Line	embryonic stem cell
21	chr14:68674800-68675400	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr14:68674800-68675400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr14:68674800-68675400	Enhancers	HSMMtube	muscle
24	chr14:68674800-68675600	Enhancers	iPS-18 Cell Line	embryonic stem cell
25	chr14:68674800-68675600	Enhancers	iPS-20b Cell Line	embryonic stem cell
26	chr14:68674800-68676200	Enhancers	Stomach Smooth Muscle	stomach
27	chr14:68674800-68677000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
28	chr14:68674800-68677000	Enhancers	Primary T helper cells PMA-I stimulated	--
29	chr14:68674800-68677200	Enhancers	Primary T helper naive cells from peripheral blood	blood
30	chr14:68675000-68675200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr14:68675000-68675200	Enhancers	Skeletal Muscle Female	skeletal muscle
32	chr14:68675000-68675200	Enhancers	NH-A	brain
33	chr14:68675000-68675400	Enhancers	H9 Cell Line	embryonic stem cell
34	chr14:68675000-68675400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr14:68675000-68675400	Enhancers	GM12878-XiMat	blood
36	chr14:68675000-68675600	Enhancers	Primary hematopoietic stem cells	blood
37	chr14:68675000-68675600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
38	chr14:68675000-68675800	Enhancers	HSMM	muscle
39	chr14:68675000-68676200	Enhancers	Ovary	ovary
40	chr14:68675000-68677000	Enhancers	Primary T cells from cord blood	blood
41	chr14:68675000-68677000	Enhancers	Primary T cells fromperipheralblood	blood
42	chr14:68675000-68677000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
43	chr14:68675000-68677000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr14:68675000-68677000	Enhancers	Rectal Smooth Muscle	rectum
45	chr14:68675000-68677200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
46	chr14:68675000-68677200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr14:68675000-68677200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr14:68675000-68677200	Enhancers	Fetal Thymus	thymus
49	chr14:68675000-68677200	Enhancers	NHLF	lung
50	chr14:68675000-68677400	Enhancers	Small Intestine	intestine

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