Variant report

Variant	rs540391
Chromosome Location	chr6:113703567-113703568
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:113696986..113699351-chr6:113701475..113704316,2	MCF-7	breast:
2	chr6:113701651..113703892-chr6:113706663..113709047,2	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs2742980	0.94[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs509687	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs558327	0.96[ASN][1000 genomes]
rs560079	0.96[ASN][1000 genomes]
rs58304380	0.82[AFR][1000 genomes]
rs6904347	0.81[JPT][hapmap]
rs6905382	0.87[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs6927951	0.82[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs9488160	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916294	chr6:113518489-113904305	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv830778	chr6:113662011-113729804	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1034256	chr6:113703567-113793790	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1021815	chr6:113703567-113799956	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:113698800-113705800	Weak transcription	NH-A	brain
2	chr6:113699000-113704600	Weak transcription	Osteobl	bone
3	chr6:113699200-113706400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr6:113701800-113703600	Enhancers	NHDF-Ad	bronchial
5	chr6:113702200-113703600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr6:113702200-113703800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr6:113702200-113704000	Enhancers	NHLF	lung
8	chr6:113702200-113705000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr6:113702400-113703600	Enhancers	Muscle Satellite Cultured Cells	--
10	chr6:113702600-113703600	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr6:113702800-113703800	Enhancers	Fetal Lung	lung
12	chr6:113703000-113703600	Enhancers	Fetal Brain Female	brain
13	chr6:113703000-113704000	Bivalent Enhancer	Primary B cells from cord blood	blood
14	chr6:113703200-113703600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr6:113703200-113703600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr6:113703200-113703600	Enhancers	Adipose Nuclei	Adipose
17	chr6:113703200-113703600	Enhancers	Fetal Brain Male	brain
18	chr6:113703200-113703600	Enhancers	HUVEC	blood vessel
19	chr6:113703200-113703800	Enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr6:113703400-113704000	Enhancers	Fetal Stomach	stomach
21	chr6:113703400-113704400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr6:113703400-113706200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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