Variant report

Variant	rs540412589
Chromosome Location	chr1:158488631-158488632
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr1:158488329-158488665	K562	blood:	n/a	n/a

Variant related genes	Relation type
ENSG00000231434	TF binding region

Extended variants
information (count: 20 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001046	chr1:158461563-158503338	Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv470743	chr1:158484285-158521392	Weak transcription Enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv437202	chr1:158484378-158493154	Weak transcription Enhancers Bivalent Enhancer	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv3527983	chr1:158487228-158489826	Enhancers Bivalent Enhancer	TF binding region	1 gene(s)	inside rSNPs	diseases
5	esv3399447	chr1:158487353-158489901	Enhancers Bivalent Enhancer	TF binding region	1 gene(s)	inside rSNPs	diseases
6	esv2438576	chr1:158487860-158489371	Inactive region	TF binding region	1 gene(s)	inside rSNPs	diseases
7	esv3375363	chr1:158488155-158488782	Inactive region	TF binding region	1 gene(s)	inside rSNPs	diseases
8	esv3527982	chr1:158488191-158488766	Inactive region	TF binding region	1 gene(s)	inside rSNPs	diseases
9	esv3524512	chr1:158488205-158488721	Inactive region	TF binding region	1 gene(s)	inside rSNPs	diseases
10	esv3320726	chr1:158488271-158488790	Inactive region	TF binding region	1 gene(s)	inside rSNPs	diseases
11	esv3527981	chr1:158488308-158488755	Inactive region	TF binding region	1 gene(s)	inside rSNPs	diseases
12	esv3320724	chr1:158488325-158488761	Inactive region	TF binding region	1 gene(s)	inside rSNPs	diseases
13	esv3320723	chr1:158488329-158488748	Inactive region	TF binding region	1 gene(s)	inside rSNPs	diseases
14	esv3524513	chr1:158488350-158488725	Inactive region	TF binding region	1 gene(s)	inside rSNPs	diseases
15	esv3382743	chr1:158488370-158488695	Inactive region	TF binding region	1 gene(s)	inside rSNPs	diseases
16	esv3320725	chr1:158488395-158488680	Inactive region	TF binding region	1 gene(s)	inside rSNPs	diseases
17	esv3527980	chr1:158488405-158488678	Inactive region	TF binding region	1 gene(s)	inside rSNPs	diseases
18	esv3320727	chr1:158488409-158488676	Inactive region	TF binding region	1 gene(s)	inside rSNPs	diseases
19	esv3524514	chr1:158488409-158488676	Inactive region	TF binding region	1 gene(s)	inside rSNPs	diseases
20	esv3527984	chr1:158488409-158488676	Inactive region	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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