Variant report

Variant	rs540430026
Chromosome Location	chr6:37340902-37340903
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:37321016..37322876-chr6:37340772..37342424,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000112130	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2498217	chr6:37339897-37343468	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv3524475	chr6:37340794-37343550	Strong transcription Enhancers Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv3475118	chr6:37340832-37343534	Strong transcription Weak transcription Genic enhancers Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv3524473	chr6:37340859-37343489	Genic enhancers Strong transcription Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv3475120	chr6:37340898-37343360	Strong transcription Weak transcription Enhancers Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv3524476	chr6:37340898-37343360	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37323000-37351400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:37323400-37349800	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr6:37323400-37356800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr6:37324000-37366800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr6:37328000-37360800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr6:37328000-37361800	Strong transcription	Dnd41	blood
7	chr6:37328600-37361200	Strong transcription	Primary T cells fromperipheralblood	blood
8	chr6:37334400-37363200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr6:37334600-37352600	Strong transcription	Primary T cells from cord blood	blood
10	chr6:37334600-37352600	Strong transcription	Primary T helper cells fromperipheralblood	blood
11	chr6:37334600-37353000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr6:37335000-37341600	Strong transcription	Fetal Stomach	stomach
13	chr6:37335400-37352400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr6:37335600-37343800	Strong transcription	Fetal Thymus	thymus
15	chr6:37335600-37345000	Strong transcription	H1 Cell Line	embryonic stem cell
16	chr6:37335600-37351600	Strong transcription	HUES64 Cell Line	embryonic stem cell
17	chr6:37335800-37347400	Strong transcription	HUES48 Cell Line	embryonic stem cell
18	chr6:37335800-37348200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr6:37336000-37351600	Strong transcription	Stomach Smooth Muscle	stomach
20	chr6:37337000-37348800	Weak transcription	NHDF-Ad	bronchial
21	chr6:37337200-37353000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
22	chr6:37337400-37357000	Weak transcription	Stomach Mucosa	stomach
23	chr6:37337400-37362600	Weak transcription	Psoas Muscle	Psoas
24	chr6:37337600-37341000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr6:37337600-37342200	Weak transcription	Rectal Smooth Muscle	rectum
26	chr6:37337600-37352000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr6:37337600-37354000	Weak transcription	Right Ventricle	heart
28	chr6:37337600-37361000	Strong transcription	Primary monocytes fromperipheralblood	blood
29	chr6:37337600-37363200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr6:37337600-37363200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr6:37337800-37341600	Weak transcription	Fetal Lung	lung
32	chr6:37337800-37342400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
33	chr6:37337800-37345200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr6:37337800-37353000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr6:37338000-37344200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr6:37338200-37345400	Weak transcription	A549	lung
37	chr6:37338400-37342000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr6:37338400-37342000	Weak transcription	NH-A	brain
39	chr6:37338400-37344600	Weak transcription	Osteobl	bone
40	chr6:37338400-37348600	Weak transcription	HSMMtube	muscle
41	chr6:37338600-37349400	Weak transcription	Pancreatic Islets	Pancreatic Islet
42	chr6:37338800-37341000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr6:37339000-37346000	Strong transcription	HepG2	liver
44	chr6:37339200-37341400	Strong transcription	Fetal Intestine Small	intestine
45	chr6:37339200-37341600	Strong transcription	Brain Hippocampus Middle	brain
46	chr6:37339200-37358400	Weak transcription	Small Intestine	intestine
47	chr6:37339200-37361000	Weak transcription	Fetal Brain Male	brain
48	chr6:37339400-37342200	Weak transcription	HMEC	breast
49	chr6:37339400-37349000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr6:37339600-37342200	Weak transcription	Fetal Brain Female	brain

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