Variant report

Variant	rs540431033
Chromosome Location	chr2:37383076-37383077
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:37374955..37377720-chr2:37382756..37385654,3	MCF-7	breast:
2	chr2:37382080..37383766-chr2:37457653..37460217,2	MCF-7	breast:
3	chr2:37373517..37380041-chr2:37380520..37385811,10	MCF-7	breast:
4	chr2:37381640..37387428-chr2:37421417..37425727,6	MCF-7	breast:
5	chr2:37353750..37355399-chr2:37381994..37383534,2	MCF-7	breast:
6	chr2:37372644..37374273-chr2:37382533..37385006,2	K562	blood:
7	chr2:37382658..37387385-chr2:37421093..37425812,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000003509	Chromatin interaction
ENSG00000138068	Chromatin interaction
ENSG00000218739	Chromatin interaction
ENSG00000055332	Chromatin interaction
ENSG00000115816	Chromatin interaction
ENSG00000233159	Chromatin interaction
ENSG00000224891	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3326671	chr2:37383073-37385621	Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37312200-37383200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:37336400-37383200	Weak transcription	Psoas Muscle	Psoas
3	chr2:37355000-37383200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr2:37361800-37383200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr2:37365800-37383600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr2:37371200-37383200	Weak transcription	Colonic Mucosa	Colon
7	chr2:37372200-37383200	Weak transcription	Gastric	stomach
8	chr2:37372600-37383200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr2:37374400-37383200	Weak transcription	NH-A	brain
10	chr2:37375000-37383200	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr2:37375800-37383200	Weak transcription	Lung	lung
12	chr2:37377200-37383200	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr2:37379800-37383200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr2:37380600-37383200	Weak transcription	Ovary	ovary
15	chr2:37381200-37383200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr2:37381200-37383200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr2:37381600-37383200	Enhancers	Primary B cells from peripheral blood	blood
18	chr2:37381600-37383200	Enhancers	Primary T cells fromperipheralblood	blood
19	chr2:37382000-37383200	Enhancers	Primary monocytes fromperipheralblood	blood
20	chr2:37382000-37383200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
21	chr2:37382000-37383200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr2:37382200-37383200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr2:37382200-37383200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
24	chr2:37382200-37383200	Enhancers	Primary B cells from cord blood	blood
25	chr2:37382200-37383200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
26	chr2:37382200-37383200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
27	chr2:37382200-37383200	Enhancers	Cortex derived primary cultured neurospheres	brain
28	chr2:37382200-37383200	Enhancers	Right Atrium	heart
29	chr2:37382200-37383200	Enhancers	Sigmoid Colon	Sigmoid Colon
30	chr2:37382200-37383200	Enhancers	Spleen	Spleen
31	chr2:37382200-37383400	Flanking Active TSS	NHEK	skin
32	chr2:37382200-37383600	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
33	chr2:37382200-37383600	Flanking Active TSS	Dnd41	blood
34	chr2:37382200-37383800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
35	chr2:37382400-37383200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
36	chr2:37382400-37383200	Enhancers	Liver	Liver
37	chr2:37382400-37383200	Enhancers	Skeletal Muscle Male	skeletal muscle
38	chr2:37382400-37383200	Enhancers	Skeletal Muscle Female	skeletal muscle
39	chr2:37382400-37383200	Enhancers	Stomach Mucosa	stomach
40	chr2:37382400-37383400	Flanking Active TSS	Brain Hippocampus Middle	brain
41	chr2:37382400-37383600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
42	chr2:37382400-37383800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
43	chr2:37382400-37383800	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
44	chr2:37382600-37383200	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr2:37382600-37383200	Enhancers	iPS-15b Cell Line	embryonic stem cell
46	chr2:37382600-37383200	Enhancers	Primary T helper naive cells from peripheral blood	blood
47	chr2:37382600-37383200	Enhancers	Brain Substantia Nigra	brain
48	chr2:37382600-37383200	Enhancers	Esophagus	oesophagus
49	chr2:37382600-37383200	Enhancers	Fetal Heart	heart
50	chr2:37382600-37383200	Enhancers	Fetal Lung	lung

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