Variant report

Variant	rs540443762
Chromosome Location	chr17:17685554-17685555
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EP300	chr17:17685251-17686314	ECC-1	luminal epithelium:	n/a	chr17:17686246-17686255 chr17:17685550-17685566 chr17:17686254-17686270
2	MXI1	chr17:17685078-17690155	SK-N-SH	brain:	n/a	chr17:17688092-17688107
3	MAX	chr17:17684901-17686362	HepG2	liver:	n/a	chr17:17685993-17686003 chr17:17685848-17685858 chr17:17686269-17686279
4	MAZ	chr17:17684151-17685976	IMR90	lung:	n/a	chr17:17685848-17685858
5	MXI1	chr17:17684832-17686018	IMR90	lung:	n/a	n/a
6	EBF1	chr17:17685491-17685866	GM12878	blood:	n/a	n/a
7	TCF12	chr17:17685296-17685728	A549	lung:	n/a	n/a
8	NFIC	chr17:17685305-17686000	ECC-1	luminal epithelium:	n/a	n/a
9	REST	chr17:17685278-17685790	H1-neurons	neurons:	n/a	n/a
10	E2F6	chr17:17684992-17685813	A549	lung:	n/a	chr17:17685372-17685384 chr17:17685131-17685141 chr17:17685375-17685384 chr17:17685127-17685136
11	EP300	chr17:17685348-17685800	ECC-1	luminal epithelium:	n/a	chr17:17685550-17685566
12	CTBP2	chr17:17684304-17685583	H1-hESC	embryonic stem cell:	n/a	n/a
13	MAX	chr17:17685051-17685991	A549	lung:	n/a	chr17:17685848-17685858
14	TAF1	chr17:17685315-17685888	H1-neurons	neurons:	n/a	n/a
15	MAZ	chr17:17685081-17685792	GM12878	blood:	n/a	n/a
16	CCNT2	chr17:17685503-17685574	K562	blood:	n/a	n/a
17	MAX	chr17:17685263-17686387	ECC-1	luminal epithelium:	n/a	chr17:17685993-17686003 chr17:17685848-17685858 chr17:17686269-17686279
18	TEAD4	chr17:17685418-17685876	ECC-1	luminal epithelium:	n/a	n/a
19	CHD2	chr17:17685417-17685644	GM12878	blood:	n/a	n/a
20	ZBTB7A	chr17:17684109-17688114	ECC-1	luminal epithelium:	n/a	chr17:17686466-17686475 chr17:17686238-17686245
21	POLR2A	chr17:17684140-17685603	SK-N-MC	brain:	n/a	n/a
22	REST	chr17:17684966-17688399	H1-neurons	neurons:	n/a	chr17:17687032-17687045 chr17:17688128-17688138 chr17:17687943-17687957 chr17:17686391-17686401 chr17:17687035-17687048 chr17:17686521-17686534 chr17:17685128-17685141 chr17:17686200-17686213
23	E2F6	chr17:17685381-17685832	A549	lung:	n/a	n/a
24	TCF12	chr17:17685033-17686007	ECC-1	luminal epithelium:	n/a	n/a
25	NFIC	chr17:17685115-17685993	ECC-1	luminal epithelium:	n/a	n/a
26	MAX	chr17:17685115-17685938	A549	lung:	n/a	chr17:17685848-17685858
27	HDAC2	chr17:17685235-17685558	HepG2	liver:	n/a	n/a
28	CTCF	chr17:17685520-17685670	AG04449	skin:	n/a	n/a
29	TCF12	chr17:17685277-17685991	ECC-1	luminal epithelium:	n/a	n/a
30	ZNF263	chr17:17685438-17685834	HEK293-T-REx	kidney:	n/a	n/a
31	ZBTB7A	chr17:17684164-17686381	ECC-1	luminal epithelium:	n/a	chr17:17686238-17686245
32	MAX	chr17:17685206-17685893	SK-N-SH	brain:	n/a	chr17:17685848-17685858
33	RELA	chr17:17685495-17685904	GM12891	blood:	n/a	n/a
34	RELA	chr17:17685531-17685855	GM19099	blood:	n/a	n/a
35	POLR2A	chr17:17684329-17688195	H1-neurons	neurons:	n/a	n/a
36	E2F6	chr17:17685052-17685778	H1-hESC	embryonic stem cell:	n/a	chr17:17685372-17685384 chr17:17685131-17685141 chr17:17685375-17685384 chr17:17685127-17685136
37	SIN3A	chr17:17684198-17687932	H1-hESC	embryonic stem cell:	n/a	chr17:17686260-17686273 chr17:17684861-17684874 chr17:17686903-17686914 chr17:17687032-17687045 chr17:17686318-17686326 chr17:17684495-17684504 chr17:17685131-17685144
38	SIN3AK20	chr17:17685529-17685931	PANC-1	pancreas:	n/a	n/a
39	MAX	chr17:17684890-17686006	ECC-1	luminal epithelium:	n/a	chr17:17685993-17686003 chr17:17685848-17685858
40	POLR2A	chr17:17685231-17686384	H1-neurons	neurons:	n/a	n/a
41	MAX	chr17:17685252-17686352	H1-hESC	embryonic stem cell:	n/a	chr17:17685993-17686003 chr17:17685848-17685858 chr17:17686269-17686279
42	MAZ	chr17:17685202-17685853	HepG2	liver:	n/a	n/a
43	ESR1	chr17:17685500-17685862	ECC-1	luminal epithelium:	n/a	n/a
44	MEF2A	chr17:17685289-17685804	SK-N-SH	brain:	n/a	chr17:17685609-17685624 chr17:17685607-17685624 chr17:17685608-17685623 chr17:17685611-17685622 chr17:17685607-17685622 chr17:17685608-17685624 chr17:17685609-17685623 chr17:17685609-17685624 chr17:17685610-17685621 chr17:17685604-17685625
45	MAX	chr17:17685214-17685831	SK-N-SH	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr17:17583171..17587600-chr17:17683205..17687633,5	MCF-7	breast:
2	chr17:17683965..17687759-chr17:17739269..17741858,4	K562	blood:
3	chr17:17581707..17587972-chr17:17684185..17691006,14	MCF-7	breast:
4	chr17:17680425..17682951-chr17:17684524..17687112,3	K562	blood:
5	chr17:17596273..17597839-chr17:17685487..17687747,2	MCF-7	breast:
6	chr17:17685362..17690405-chr17:17711256..17718354,8	MCF-7	breast:
7	chr17:17673495..17677565-chr17:17684022..17690653,6	MCF-7	breast:
8	chr17:17685392..17687636-chr17:17695212..17698181,2	MCF-7	breast:
9	chr17:17685134..17688509-chr17:17722863..17726624,4	MCF-7	breast:
10	chr17:17685438..17688763-chr17:17737889..17741903,5	K562	blood:

Variant related genes	Relation type
SMCR5	TF binding region
ENSG00000108557	Chromatin interaction
ENSG00000072310	Chromatin interaction
ENSG00000264167	Chromatin interaction
ENSG00000207839	Chromatin interaction
ENSG00000226746	Chromatin interaction
ENSG00000237328	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:35 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv907748	chr17:17412032-17782404	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
2	nsv1065270	chr17:17430116-17823086	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
3	nsv543236	chr17:17430116-17823086	Bivalent Enhancer Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
4	nsv907752	chr17:17569012-17750907	Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
5	nsv531183	chr17:17571035-18205309	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	123 gene(s)	inside rSNPs	diseases
6	nsv907753	chr17:17573539-17747289	Genic enhancers Enhancers Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
7	nsv907754	chr17:17573539-17782404	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	78 gene(s)	inside rSNPs	diseases
8	nsv1061126	chr17:17578826-17803194	Strong transcription Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
9	nsv543238	chr17:17578826-17803194	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
10	nsv833385	chr17:17594037-17765578	Enhancers Genic enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
11	nsv1058884	chr17:17594370-17803194	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
12	nsv543240	chr17:17594370-17803194	Genic enhancers Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
13	nsv543241	chr17:17596222-17703059	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
14	nsv1064176	chr17:17596222-17803194	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
15	nsv543242	chr17:17596222-17803194	Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
16	nsv1062361	chr17:17598407-17746899	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	73 gene(s)	inside rSNPs	diseases
17	nsv543243	chr17:17598407-17746899	Genic enhancers Enhancers Bivalent Enhancer Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	73 gene(s)	inside rSNPs	diseases
18	nsv907756	chr17:17619859-17747289	Enhancers Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
19	nsv522668	chr17:17619859-17752809	Flanking Active TSS Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
20	nsv907757	chr17:17619859-17752809	Flanking Bivalent TSS/Enh Active TSS Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Weak transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
21	nsv907758	chr17:17619859-17782404	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
22	nsv907759	chr17:17619859-17802478	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
23	nsv532109	chr17:17630064-17700497	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
24	nsv1059949	chr17:17632590-17803194	Enhancers Genic enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
25	nsv543244	chr17:17632590-17803194	Weak transcription Flanking Active TSS Active TSS Genic enhancers Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
26	nsv907760	chr17:17649423-17782404	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
27	nsv907761	chr17:17649423-17802478	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
28	nsv916653	chr17:17651916-18454952	Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
29	nsv907762	chr17:17668071-17802478	Weak transcription Genic enhancers Active TSS Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
30	esv1804029	chr17:17669662-17714250	Flanking Active TSS Genic enhancers Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
31	nsv907763	chr17:17673824-17749822	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
32	nsv907764	chr17:17673824-17754633	Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
33	nsv907765	chr17:17682484-17802478	Active TSS Strong transcription Enhancers Genic enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
34	nsv907766	chr17:17682484-17957348	Enhancers Strong transcription Flanking Active TSS Genic enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
35	esv3439095	chr17:17685252-17688100	Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:17678200-17687600	Weak transcription	Hela-S3	cervix
2	chr17:17681000-17685600	Enhancers	Fetal Lung	lung
3	chr17:17682200-17687200	Weak transcription	HSMMtube	muscle
4	chr17:17683600-17685800	Enhancers	Fetal Brain Male	brain
5	chr17:17683600-17686200	Enhancers	Liver	Liver
6	chr17:17683800-17686000	Enhancers	Spleen	Spleen
7	chr17:17683800-17686200	Enhancers	GM12878-XiMat	blood
8	chr17:17684000-17685600	Enhancers	Rectal Mucosa Donor 29	rectum
9	chr17:17684000-17685800	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr17:17684000-17686200	Enhancers	Lung	lung
11	chr17:17684200-17685600	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
12	chr17:17684200-17685800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr17:17684200-17687600	Active TSS	ES-I3 Cell Line	embryonic stem cell
14	chr17:17684200-17688000	Active TSS	H9 Cell Line	embryonic stem cell
15	chr17:17684200-17688000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
16	chr17:17684200-17688200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr17:17684400-17686200	Bivalent Enhancer	Primary neutrophils fromperipheralblood	blood
18	chr17:17684400-17686800	Weak transcription	Fetal Kidney	kidney
19	chr17:17684400-17687200	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr17:17684400-17687200	Flanking Active TSS	HMEC	breast
21	chr17:17684400-17688200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr17:17684600-17685600	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
23	chr17:17684600-17686200	Bivalent Enhancer	Stomach Mucosa	stomach
24	chr17:17684600-17687800	Flanking Active TSS	Primary hematopoietic stem cells	blood
25	chr17:17684800-17685800	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
26	chr17:17684800-17686200	Weak transcription	K562	blood
27	chr17:17684800-17687400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
28	chr17:17684800-17687400	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr17:17684800-17687600	Active TSS	HUES6 Cell Line	embryonic stem cell
30	chr17:17684800-17687600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr17:17684800-17687800	Active TSS	iPS-15b Cell Line	embryonic stem cell
32	chr17:17684800-17688400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr17:17685000-17685600	Flanking Bivalent TSS/Enh	Fetal Thymus	thymus
34	chr17:17685000-17686000	Flanking Bivalent TSS/Enh	Primary T regulatory cells fromperipheralblood	blood
35	chr17:17685000-17686000	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr17:17685000-17686200	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
37	chr17:17685000-17686200	Flanking Bivalent TSS/Enh	Thymus	Thymus
38	chr17:17685000-17687000	Active TSS	Breast Myoepithelial Primary Cells	Breast
39	chr17:17685000-17687000	Active TSS	Primary T helper naive cells fromperipheralblood	blood
40	chr17:17685000-17687200	Active TSS	Primary T cells from cord blood	blood
41	chr17:17685000-17687400	Flanking Active TSS	HUVEC	blood vessel
42	chr17:17685000-17687600	Active TSS	Aorta	Aorta
43	chr17:17685000-17687600	Active TSS	Pancreatic Islets	Pancreatic Islet
44	chr17:17685000-17687600	Active TSS	Ovary	ovary
45	chr17:17685000-17687800	Flanking Active TSS	Colonic Mucosa	Colon
46	chr17:17685000-17688000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
47	chr17:17685200-17685600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
48	chr17:17685200-17685600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
49	chr17:17685200-17685600	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
50	chr17:17685200-17685600	Active TSS	Rectal Mucosa Donor 31	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links