Variant report

Variant rs540455970
Chromosome Location chr3:159493065-159493066
allele -/G
Outlinks Ensembl   UCSC
Chromatin state (count:76 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:159483800-159493200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
2 chr3:159484000-159494600 Weak transcription Psoas Muscle Psoas
3 chr3:159484200-159493200 Weak transcription Lung lung
4 chr3:159484200-159501200 Weak transcription Placenta Amnion Placenta Amnion
5 chr3:159484400-159493200 Weak transcription Fetal Stomach stomach
6 chr3:159484400-159505400 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
7 chr3:159484600-159500400 Weak transcription Fetal Intestine Small intestine
8 chr3:159485600-159493400 Weak transcription Fetal Brain Female brain
9 chr3:159486600-159493200 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
10 chr3:159486800-159494000 Weak transcription Fetal Heart heart
11 chr3:159488400-159494600 Weak transcription Spleen Spleen
12 chr3:159488600-159493200 Weak transcription Pancreas Pancrea
13 chr3:159488600-159493200 Weak transcription Rectal Mucosa Donor 31 rectum
14 chr3:159490200-159501400 Weak transcription Aorta Aorta
15 chr3:159491000-159493200 Enhancers Breast Myoepithelial Primary Cells Breast
16 chr3:159491000-159495200 Enhancers Brain Cingulate Gyrus brain
17 chr3:159491000-159495200 Enhancers Colon Smooth Muscle Colon
18 chr3:159491000-159495200 Enhancers Rectal Smooth Muscle rectum
19 chr3:159491000-159495200 Enhancers HUVEC blood vessel
20 chr3:159492200-159495000 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
21 chr3:159492400-159493200 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
22 chr3:159492400-159493400 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
23 chr3:159492400-159493800 Enhancers Brain Dorsolateral Prefrontal Cortex brain
24 chr3:159492400-159495200 Enhancers Brain Inferior Temporal Lobe brain
25 chr3:159492600-159493200 Enhancers iPS-20b Cell Line embryonic stem cell
26 chr3:159492600-159493200 Enhancers Stomach Smooth Muscle stomach
27 chr3:159492600-159493800 Enhancers A549 lung
28 chr3:159492600-159494400 Enhancers iPS-18 Cell Line embryonic stem cell
29 chr3:159492600-159495000 Enhancers Osteobl bone
30 chr3:159492800-159493600 Genic enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
31 chr3:159492800-159493600 Enhancers Stomach Mucosa stomach
32 chr3:159492800-159494600 Enhancers Foreskin Fibroblast Primary Cells skin02 Skin
33 chr3:159492800-159494800 Enhancers HUES48 Cell Line embryonic stem cell
34 chr3:159492800-159494800 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
35 chr3:159492800-159494800 Enhancers NHDF-Ad bronchial
36 chr3:159492800-159495200 Enhancers HSMM muscle
37 chr3:159493000-159493200 Enhancers H1 Cell Line embryonic stem cell
38 chr3:159493000-159493200 Bivalent Enhancer H9 Derived Neuron Cultured Cells ES cell derived
39 chr3:159493000-159493200 Enhancers HUES64 Cell Line embryonic stem cell
40 chr3:159493000-159493200 Enhancers iPS DF 19.11 Cell Line embryonic stem cell
41 chr3:159493000-159493200 Enhancers Brain Angular Gyrus brain
42 chr3:159493000-159493200 Enhancers HSMMtube muscle
43 chr3:159493000-159493400 Flanking Active TSS Brain Substantia Nigra brain
44 chr3:159493000-159493400 Enhancers Gastric stomach
45 chr3:159493000-159493400 Enhancers Ovary ovary
46 chr3:159493000-159493400 Enhancers Skeletal Muscle Female skeletal muscle
47 chr3:159493000-159493600 Genic enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
48 chr3:159493000-159493600 Enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
49 chr3:159493000-159493600 Enhancers H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
50 chr3:159493000-159493600 Flanking Active TSS HUES6 Cell Line embryonic stem cell

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