Variant report

Variant rs540468507
Chromosome Location chr5:41510443-41510444
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:91 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:41505600-41511400 Active TSS Right Atrium heart
2 chr5:41505800-41511400 Active TSS Right Ventricle heart
3 chr5:41506800-41511000 Active TSS Ovary ovary
4 chr5:41507800-41511200 Active TSS Left Ventricle heart
5 chr5:41508000-41511000 Active TSS Fetal Heart heart
6 chr5:41508200-41511400 Active TSS Pancreatic Islets Pancreatic Islet
7 chr5:41508400-41511000 Active TSS hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
8 chr5:41509400-41510600 Flanking Bivalent TSS/Enh Brain Germinal Matrix brain
9 chr5:41509400-41510800 Flanking Active TSS Pancreas Pancrea
10 chr5:41509400-41511000 Bivalent/Poised TSS ES-I3 Cell Line embryonic stem cell
11 chr5:41509400-41511200 Bivalent/Poised TSS iPS-18 Cell Line embryonic stem cell
12 chr5:41509400-41511200 Active TSS Brain Substantia Nigra brain
13 chr5:41509600-41510600 Bivalent/Poised TSS Brain Dorsolateral Prefrontal Cortex brain
14 chr5:41509600-41510600 Flanking Active TSS Lung lung
15 chr5:41509600-41510600 Flanking Bivalent TSS/Enh Skeletal Muscle Male skeletal muscle
16 chr5:41509600-41510800 Bivalent/Poised TSS ES-UCSF4 Cell Line embryonic stem cell
17 chr5:41509600-41510800 Flanking Bivalent TSS/Enh Skeletal Muscle Female skeletal muscle
18 chr5:41509600-41510800 ZNF genes & repeats Spleen Spleen
19 chr5:41509600-41511000 Bivalent/Poised TSS iPS-15b Cell Line embryonic stem cell
20 chr5:41509600-41511000 Bivalent/Poised TSS Rectal Smooth Muscle rectum
21 chr5:41509800-41510600 Bivalent Enhancer Placenta Placenta
22 chr5:41509800-41510800 Flanking Bivalent TSS/Enh H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
23 chr5:41509800-41510800 Flanking Bivalent TSS/Enh Adipose Nuclei Adipose
24 chr5:41509800-41510800 Bivalent/Poised TSS Colonic Mucosa Colon
25 chr5:41509800-41510800 Flanking Bivalent TSS/Enh Fetal Adrenal Gland Adrenal Gland
26 chr5:41509800-41511200 Bivalent/Poised TSS H9 Cell Line embryonic stem cell
27 chr5:41509800-41511200 Bivalent/Poised TSS HUES6 Cell Line embryonic stem cell
28 chr5:41509800-41511200 Bivalent/Poised TSS HUES64 Cell Line embryonic stem cell
29 chr5:41509800-41511200 Active TSS Aorta Aorta
30 chr5:41509800-41511200 Bivalent/Poised TSS Fetal Intestine Small intestine
31 chr5:41509800-41511200 Bivalent Enhancer Fetal Lung lung
32 chr5:41510000-41510600 Flanking Bivalent TSS/Enh Brain Angular Gyrus brain
33 chr5:41510000-41510800 Flanking Bivalent TSS/Enh Ganglion Eminence derived primary cultured neurospheres brain
34 chr5:41510000-41510800 Flanking Active TSS Placenta Amnion Placenta Amnion
35 chr5:41510000-41510800 Flanking Bivalent TSS/Enh Stomach Smooth Muscle stomach
36 chr5:41510000-41510800 Bivalent/Poised TSS NHLF lung
37 chr5:41510000-41511000 Bivalent/Poised TSS H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
38 chr5:41510000-41511000 Bivalent/Poised TSS HUES48 Cell Line embryonic stem cell
39 chr5:41510000-41511200 Bivalent/Poised TSS iPS DF 6.9 Cell Line embryonic stem cell
40 chr5:41510000-41511200 Bivalent/Poised TSS NH-A brain
41 chr5:41510200-41510600 Bivalent Enhancer H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
42 chr5:41510200-41510600 Flanking Bivalent TSS/Enh hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
43 chr5:41510200-41510600 Flanking Active TSS hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
44 chr5:41510200-41510600 Flanking Bivalent TSS/Enh Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
45 chr5:41510200-41510600 Flanking Bivalent TSS/Enh Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
46 chr5:41510200-41510600 Flanking Bivalent TSS/Enh Muscle Satellite Cultured Cells --
47 chr5:41510200-41510600 Flanking Bivalent TSS/Enh Rectal Mucosa Donor 31 rectum
48 chr5:41510200-41510800 Bivalent Enhancer H1 Derived Mesenchymal Stem Cells ES cell derived
49 chr5:41510200-41510800 Flanking Bivalent TSS/Enh H9 Derived Neuron Cultured Cells ES cell derived
50 chr5:41510200-41510800 Flanking Bivalent TSS/Enh Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell

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