Variant report

Variant	rs540477991
Chromosome Location	chr2:178536031-178536032
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:178533626..178535228-chr2:178535564..178538374,2	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999086	chr2:178262348-178773585	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv536055	chr2:178262348-178773585	Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv583688	chr2:178427640-178540293	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv431812	chr2:178525371-178584470	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv1007925	chr2:178535922-178577002	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:178531400-178540000	Weak transcription	K562	blood
2	chr2:178532800-178537000	Enhancers	Fetal Kidney	kidney
3	chr2:178532800-178538000	Weak transcription	HSMM	muscle
4	chr2:178533800-178536600	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
5	chr2:178533800-178536600	Enhancers	Dnd41	blood
6	chr2:178534000-178537200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr2:178534200-178537000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr2:178534400-178537400	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
9	chr2:178534800-178536200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr2:178534800-178536200	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr2:178534800-178537000	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr2:178534800-178537000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr2:178534800-178537200	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
14	chr2:178535000-178544800	Weak transcription	Right Atrium	heart
15	chr2:178535200-178536200	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
16	chr2:178535200-178536800	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
17	chr2:178535400-178536200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr2:178535400-178536200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr2:178535400-178540000	Weak transcription	Liver	Liver
20	chr2:178535600-178536200	Enhancers	Primary hematopoietic stem cells short term culture	blood
21	chr2:178535600-178536600	Enhancers	Fetal Muscle Leg	muscle
22	chr2:178535600-178536800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr2:178535600-178537000	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr2:178535800-178536200	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr2:178535800-178536200	Enhancers	GM12878-XiMat	blood
26	chr2:178535800-178537000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr2:178536000-178536600	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
28	chr2:178536000-178536600	Enhancers	Fetal Stomach	stomach
29	chr2:178536000-178537200	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
30	chr2:178536000-178540000	Weak transcription	Brain Substantia Nigra	brain
31	chr2:178536000-178540000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr2:178536000-178544600	Weak transcription	Psoas Muscle	Psoas

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