Variant report

Variant	rs540495660
Chromosome Location	chr7:18620472-18620473
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755157	chr7:18337660-18805860	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv887812	chr7:18548719-18622368	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv830917	chr7:18612436-18817712	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv2762656	chr7:18620004-18625610	Weak transcription Enhancers Strong transcription Genic enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:18606800-18620600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr7:18606800-18631400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr7:18607000-18630000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr7:18610600-18629800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr7:18610800-18629600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr7:18611600-18633000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr7:18613200-18633200	Weak transcription	Fetal Muscle Leg	muscle
8	chr7:18613600-18624800	Weak transcription	Left Ventricle	heart
9	chr7:18613600-18633200	Weak transcription	Fetal Muscle Trunk	muscle
10	chr7:18614200-18633200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr7:18614400-18620600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr7:18614400-18624800	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr7:18614400-18630000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr7:18614600-18620600	Weak transcription	Right Ventricle	heart
15	chr7:18614600-18620600	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr7:18614600-18631200	Weak transcription	Fetal Stomach	stomach
17	chr7:18614600-18633200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr7:18614600-18640400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr7:18614600-18640400	Weak transcription	Spleen	Spleen
20	chr7:18614600-18644200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr7:18614800-18620600	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr7:18616000-18621000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr7:18616200-18630000	Weak transcription	Primary hematopoietic stem cells	blood
24	chr7:18616800-18620600	Weak transcription	Fetal Heart	heart
25	chr7:18617000-18640400	Weak transcription	Brain Angular Gyrus	brain
26	chr7:18617200-18629800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr7:18617400-18621400	Weak transcription	Primary B cells from cord blood	blood
28	chr7:18617400-18624200	Weak transcription	Primary B cells from peripheral blood	blood
29	chr7:18618000-18623000	Weak transcription	Aorta	Aorta
30	chr7:18618400-18641000	Weak transcription	Psoas Muscle	Psoas
31	chr7:18618800-18624800	Weak transcription	Monocytes-CD14+_RO01746	blood
32	chr7:18619200-18621400	Enhancers	Fetal Brain Female	brain
33	chr7:18619400-18622000	Enhancers	Brain Inferior Temporal Lobe	brain
34	chr7:18620000-18621800	Enhancers	Brain Cingulate Gyrus	brain
35	chr7:18620200-18621200	Enhancers	HSMM	muscle
36	chr7:18620200-18621200	Enhancers	HSMMtube	muscle
37	chr7:18620200-18621600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr7:18620200-18621800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr7:18620200-18621800	Enhancers	Cortex derived primary cultured neurospheres	brain
40	chr7:18620200-18622000	Enhancers	Brain Substantia Nigra	brain
41	chr7:18620200-18622000	Enhancers	Fetal Brain Male	brain
42	chr7:18620400-18620600	Weak transcription	Adipose Nuclei	Adipose
43	chr7:18620400-18621000	Enhancers	Brain Hippocampus Middle	brain
44	chr7:18620400-18621200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr7:18620400-18621200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
46	chr7:18620400-18621400	Enhancers	Brain Anterior Caudate	brain
47	chr7:18620400-18621800	Enhancers	Brain Germinal Matrix	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links