Variant report

Variant	rs540502193
Chromosome Location	chr5:178015794-178015795
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:178015408..178017355-chr5:178028126..178029814,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948342	chr5:177384542-178168737	Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Weak transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	141 gene(s)	inside rSNPs	diseases
2	nsv1029398	chr5:177502106-178070654	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	136 gene(s)	inside rSNPs	diseases
3	nsv883214	chr5:177876309-178047217	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1031666	chr5:177988601-178236068	Bivalent/Poised TSS Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	nsv883216	chr5:178002325-178025087	Enhancers ZNF genes & repeats Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	esv3431503	chr5:178015746-178018644	Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:178012800-178016600	Weak transcription	Right Atrium	heart
2	chr5:178012800-178016800	Weak transcription	Gastric	stomach
3	chr5:178013200-178016000	Weak transcription	Pancreas	Pancrea
4	chr5:178014200-178016600	Bivalent Enhancer	Fetal Heart	heart
5	chr5:178014400-178015800	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr5:178014600-178015800	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
7	chr5:178014600-178015800	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
8	chr5:178014600-178018000	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
9	chr5:178014800-178015800	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
10	chr5:178014800-178015800	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
11	chr5:178014800-178015800	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr5:178014800-178015800	Bivalent Enhancer	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr5:178014800-178016000	Bivalent Enhancer	Primary neutrophils fromperipheralblood	blood
14	chr5:178014800-178016200	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
15	chr5:178014800-178016600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
16	chr5:178015000-178015800	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr5:178015000-178015800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr5:178015000-178015800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
19	chr5:178015000-178015800	Weak transcription	Right Ventricle	heart
20	chr5:178015000-178016000	Bivalent Enhancer	Fetal Stomach	stomach
21	chr5:178015000-178016600	Bivalent Enhancer	Fetal Muscle Leg	muscle
22	chr5:178015000-178016600	Enhancers	Left Ventricle	heart
23	chr5:178015200-178016400	Bivalent Enhancer	Stomach Smooth Muscle	stomach
24	chr5:178015400-178015800	Flanking Bivalent TSS/Enh	ES-I3 Cell Line	embryonic stem cell
25	chr5:178015600-178015800	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
26	chr5:178015600-178016600	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
27	chr5:178015600-178016800	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr5:178015600-178017800	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell

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